Detailed information of TA system TA151041

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relB-parE/ParE-RHH
• Location: 347506..348062
• Replicon: chromosome
• Accession: NZ_CP049205
• Organism: Xanthomonas oryzae pv. oryzae strain K1

Toxin (Protein)

• Gene name: parE
• Uniprot ID: -
• Locus tag: G6N84_RS01565
• Protein ID: WP_027703932.1
• Coordinates: 347772..348062 (+)
• Length: 97 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: A0A854CIX2
• Locus tag: G6N84_RS01560
• Protein ID: WP_011408759.1
• Coordinates: 347506..347784 (+)
• Length: 93 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
G6N84_RS01530	342759..343364	-	606	Protein_290	DNA-3-methyladenine glycosylase	-
G6N84_RS01535	343466..344431	-	966	WP_109181928.1	IS1595-like element ISXo5 family transposase	-
G6N84_RS01540	344520..344711	-	192	Protein_292	transposase	-
G6N84_RS01545	344876..346060	+	1185	WP_011408397.1	IS256 family transposase	-
G6N84_RS01550	346821..347021	+	201	WP_027703931.1	ribbon-helix-helix protein, CopG family	-
G6N84_RS23480	346966..347310	+	345	WP_199285675.1	hypothetical protein	-
G6N84_RS23485	347222..347425	+	204	WP_199285669.1	hypothetical protein	-
G6N84_RS01560	347506..347784	+	279	WP_011408759.1	CopG family ribbon-helix-helix protein	Antitoxin
G6N84_RS01565	347772..348062	+	291	WP_027703932.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
G6N84_RS23490	348323..348520	+	198	WP_004541336.1	hypothetical protein	-
G6N84_RS01575	348664..348843	+	180	WP_015463309.1	hypothetical protein	-
G6N84_RS01590	349707..350108	-	402	WP_011259345.1	H-NS histone family protein	-
G6N84_RS01595	350330..350506	+	177	Protein_302	DUF3606 domain-containing protein	-
G6N84_RS01600	350522..350728	+	207	Protein_303	hypothetical protein	-
G6N84_RS01605	350788..351125	+	338	Protein_304	ATP-dependent DNA ligase	-
G6N84_RS01610	351201..352292	-	1092	WP_041182166.1	ribonuclease D	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-94)

Antitoxin

• Ribbon-helix-helix protein, CopG (5-42)

Sequences

Toxin

Protein

• Length: 97 a.a.
• Molecular weight: 10915.48 Da
• Isoelectric Point: 9.5554

>T151041 WP_027703932.1 NZ_CP049205:347772-348062 [Xanthomonas oryzae pv. oryzae]
MPQVIFAPAAIGDMLRLREFLRPKNPDAARRAGEAIRRGVQALGAHPRMGRLIEDLSEQYREWLIDFGDSGYVARYRFDG
DTVTILAVRHQKEAGY

Nucleotide

• Length: 291 bp

>T151041 NZ_CP065178:c2682816-2682463 [Pectobacterium quasiaquaticum]
GTGTGGAAAATTGAAACGACGGACGTGTTTGATAGCTGGTTCGGCACATTAAATGATAGGGATCGCGCATATGTGCTTGC
AGCACTTATCGTGTTACGGGAAAAAGGCCCAATGCTATCTAGGCCTTATGCTGATACGGTAAAAGGCTCCCAGTATAGCA
ACATGAAAGAATTACGTATTCAGAGCGGAGGGATGCCAATACGGGCATTTTTTGCTTTCGATCCACATCGCACGGGGATC
CTCCTCTGTGCGGGGAATAAGTCCGGCAATGAAAAGCGCTTTTATGATGAGATGATTCCGCTTGCCGATCGGGAATTCAC
AAAGTATCTGAAAAAATCAGAGAAGAGAGGGTAA

Antitoxin

Protein

• Length: 93 a.a.
• Molecular weight: 10826.11 Da
• Isoelectric Point: 4.9736

>AT151041 WP_011408759.1 NZ_CP049205:347506-347784 [Xanthomonas oryzae pv. oryzae]
MVTATSIKLDDELKGRVQHLAESRRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK

Nucleotide

• Length: 279 bp

>AT151041 NZ_CP065178:c2682458-2682156 [Pectobacterium quasiaquaticum]
ATGGGCAGAACGCTGGAACAGCTCCTTGCGGATGAAAAACCAGACGTCGTCGTTGAGGCTCACGCTATAGCGGCAGACAT
GTTACTCAATATTCATCTCGCCGAACTGCGTGAGAGGGTGCAAAAAACGCAAGTGGAAATGGCGCAGGTGCTTGGATTAA
AACAGCCAACCATTGCGGGAATGGAGAAACCCGGCCGCGATTTGAAACTTTCCACACTCAAACGCTATGTTGAGGCGACC
GGCAGTAAACTGCGCCTTGATGTTGAACTGCCGGACGGTTCTCACTACGGGTTCACGCTGTAA

Structures

Antitoxin

• AlphaFold DB: A0A854CIX2