Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | tacAT/DUF1778(antitoxin) |
Location | 101670..102445 | Replicon | plasmid pIncFIB |
Accession | NZ_CP049202 | ||
Organism | Escherichia coli strain PapRG-04-4 |
Toxin (Protein)
Gene name | tacT | Uniprot ID | A0A0C2EI97 |
Locus tag | G6Z99_RS26610 | Protein ID | WP_000405250.1 |
Coordinates | 101670..102152 (-) | Length | 161 a.a. |
Antitoxin (Protein)
Gene name | tacA | Uniprot ID | - |
Locus tag | G6Z99_RS26615 | Protein ID | WP_072146426.1 |
Coordinates | 102143..102445 (-) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
G6Z99_RS26570 | 97260..97769 | - | 510 | Protein_105 | hypothetical protein | - |
G6Z99_RS26575 | 97847..98137 | - | 291 | WP_158179414.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
G6Z99_RS26580 | 98127..98381 | - | 255 | WP_097468987.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
G6Z99_RS26590 | 99259..100281 | - | 1023 | WP_164476302.1 | replication initiation protein | - |
G6Z99_RS26595 | 100271..100804 | - | 534 | WP_040089446.1 | replication protein | - |
G6Z99_RS26600 | 100797..100871 | - | 75 | WP_001367777.1 | RepA leader peptide Tap | - |
G6Z99_RS26605 | 101105..101362 | - | 258 | WP_001136637.1 | replication regulatory protein RepA | - |
G6Z99_RS26610 | 101670..102152 | - | 483 | WP_000405250.1 | GNAT family N-acetyltransferase | Toxin |
G6Z99_RS26615 | 102143..102445 | - | 303 | WP_072146426.1 | DUF1778 domain-containing protein | Antitoxin |
G6Z99_RS26620 | 102766..102972 | - | 207 | WP_206438902.1 | Hok/Gef family protein | - |
- | 102959..103020 | + | 62 | NuclAT_1 | - | - |
- | 102959..103020 | + | 62 | NuclAT_1 | - | - |
- | 102959..103020 | + | 62 | NuclAT_1 | - | - |
- | 102959..103020 | + | 62 | NuclAT_1 | - | - |
G6Z99_RS26625 | 103261..103470 | - | 210 | WP_040089443.1 | hemolysin expression modulator Hha | - |
G6Z99_RS26630 | 103527..103763 | - | 237 | WP_061358569.1 | hypothetical protein | - |
G6Z99_RS26635 | 104010..104570 | - | 561 | WP_164476304.1 | fertility inhibition protein FinO | - |
G6Z99_RS26640 | 104625..105371 | - | 747 | WP_164476305.1 | conjugal transfer pilus acetylase TraX | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Conjugative plasmid | - | pefD / pefC / pefA | 1..167766 | 167766 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 161 a.a. Molecular weight: 17649.42 Da Isoelectric Point: 7.0386
>T151012 WP_000405250.1 NZ_CP049202:c102152-101670 [Escherichia coli]
MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNASRTFVICLEGTLRVVGFYSLATGSVTHAELGRSLRHN
MPNPVPVVLLGRLAVDVCTQGHGFGKWLLSDAIHRVVNVAEQVGVKAVMVHAIDDDARAFYERFGFVQSVVAPDTLFYKV
MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNASRTFVICLEGTLRVVGFYSLATGSVTHAELGRSLRHN
MPNPVPVVLLGRLAVDVCTQGHGFGKWLLSDAIHRVVNVAEQVGVKAVMVHAIDDDARAFYERFGFVQSVVAPDTLFYKV
Download Length: 483 bp
>T151012 NZ_CP065177:c170182-170003 [Pectobacterium quasiaquaticum]
ATGGATAGCAGGACGTTAATAGCAGAAATCAAGGCCGATGGGTGGGAACTGATAAGAGTGAACGGAAGCCACCACCATTT
TATGCATCCTAGTAAACTGGGGTTAGTCACAATCCCCCACCCTAAGAAAGATTTACCGATAGGCACGGTAAAAAACATCA
GGAAACAAGCAGGAATATGA
ATGGATAGCAGGACGTTAATAGCAGAAATCAAGGCCGATGGGTGGGAACTGATAAGAGTGAACGGAAGCCACCACCATTT
TATGCATCCTAGTAAACTGGGGTTAGTCACAATCCCCCACCCTAAGAAAGATTTACCGATAGGCACGGTAAAAAACATCA
GGAAACAAGCAGGAATATGA
Antitoxin
Download Length: 101 a.a. Molecular weight: 11630.17 Da Isoelectric Point: 4.7174
>AT151012 WP_072146426.1 NZ_CP049202:c102445-102143 [Escherichia coli]
IEVFMSTAASVRKTPRENQINIRATDEERAVIDYAASLVNKNRTDFIIELAYQEAKNIILDQRLFVLDNERYDSFITQLE
APVQNAEGRERLMAVKPEWK
IEVFMSTAASVRKTPRENQINIRATDEERAVIDYAASLVNKNRTDFIIELAYQEAKNIILDQRLFVLDNERYDSFITQLE
APVQNAEGRERLMAVKPEWK
Download Length: 303 bp
>AT151012 NZ_CP065177:c169975-169565 [Pectobacterium quasiaquaticum]
ATGTTTTATCCGATTGCAATTGAAGCAGGCGACGATACCCACGCATACGGTGTAACAGTGCCAGATCTACCGGGCTGTTT
TTCCGCAGGCGATACGCTAGACGATGCCATCGCGAATGCGAAAGAGGCGATTACCGGACATATCGAACTGCTGATCGAGA
TGGGTCAGGATATTCCTACCGTGTCTTCAGTAGGCCAATGGGCAAAAAGCGCAGAATACGCTGGGTACACGTGGGCGGTT
GTTGATATCGATGTGACGCGTTTAATGGGCGGTTCAGAAAAAATTAACGTCACGCTGCCTAAATCCCTGATTGACCGAAT
TGATCGTTGCGTGGCGAGTAATCCTGAATTTAAAAGCCGCTCAGGTTTTCTCGCGCAGGCGGCATTAGCGCGAATCTCGT
CTTCCCGATGA
ATGTTTTATCCGATTGCAATTGAAGCAGGCGACGATACCCACGCATACGGTGTAACAGTGCCAGATCTACCGGGCTGTTT
TTCCGCAGGCGATACGCTAGACGATGCCATCGCGAATGCGAAAGAGGCGATTACCGGACATATCGAACTGCTGATCGAGA
TGGGTCAGGATATTCCTACCGTGTCTTCAGTAGGCCAATGGGCAAAAAGCGCAGAATACGCTGGGTACACGTGGGCGGTT
GTTGATATCGATGTGACGCGTTTAATGGGCGGTTCAGAAAAAATTAACGTCACGCTGCCTAAATCCCTGATTGACCGAAT
TGATCGTTGCGTGGCGAGTAATCCTGAATTTAAAAGCCGCTCAGGTTTTCTCGCGCAGGCGGCATTAGCGCGAATCTCGT
CTTCCCGATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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