Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1064476..1064747 | Replicon | chromosome |
| Accession | NZ_CP049198 | ||
| Organism | Escherichia coli strain E686 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1064606..1064709 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1064476..1064747 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6000_RS04995 | 1061031..1061693 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G6000_RS05000 | 1061717..1062373 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| G6000_RS05005 | 1062475..1062705 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6000_RS05010 | 1062844..1063218 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| G6000_RS05015 | 1063222..1064094 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| G6000_RS05020 | 1064107..1064448 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 1064476..1064747 | - | 272 | - | - | Antitoxin |
| - | 1064606..1064709 | + | 104 | - | - | Toxin |
| G6000_RS05025 | 1064844..1065500 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| G6000_RS05030 | 1065501..1065692 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G6000_RS05035 | 1065797..1066033 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G6000_RS05040 | 1066151..1067590 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150956 NZ_CP049198:1064606-1064709 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT150956 NZ_CP049198:c1064747-1064476 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
