Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1563574..1563845 | Replicon | chromosome |
| Accession | NZ_CP049196 | ||
| Organism | Escherichia coli strain E118 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1563704..1563807 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1563574..1563845 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5T40_RS07345 | 1560129..1560791 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G5T40_RS07350 | 1560815..1561471 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| G5T40_RS07355 | 1561573..1561803 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G5T40_RS07360 | 1561942..1562316 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| G5T40_RS07365 | 1562320..1563192 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| G5T40_RS07370 | 1563205..1563546 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 1563574..1563845 | - | 272 | - | - | Antitoxin |
| - | 1563704..1563807 | + | 104 | - | - | Toxin |
| G5T40_RS07375 | 1563942..1564598 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| G5T40_RS07380 | 1564599..1564790 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G5T40_RS07385 | 1564895..1565131 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G5T40_RS07390 | 1565249..1566688 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150899 NZ_CP049196:1563704-1563807 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT150899 NZ_CP049196:c1563845-1563574 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
