Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 945828..946029 | Replicon | chromosome |
| Accession | NZ_CP049192 | ||
| Organism | Enterobacter hormaechei strain Y2152 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 945833..945936 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 945828..946029 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5577_RS04450 | 942094..943536 | + | 1443 | WP_072204417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G5577_RS04455 | 943643..943882 | + | 240 | WP_003859885.1 | YebV family protein | - |
| G5577_RS04460 | 943917..944561 | - | 645 | WP_045337547.1 | protein-serine/threonine phosphatase | - |
| G5577_RS04465 | 944729..945709 | + | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| G5577_RS04470 | 945755..945952 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 945828..946029 | + | 202 | - | - | Antitoxin |
| - | 945833..945936 | - | 104 | - | - | Toxin |
| G5577_RS04475 | 946078..946416 | - | 339 | WP_048240591.1 | YebY family protein | - |
| G5577_RS04480 | 946433..947302 | - | 870 | WP_048240589.1 | copper homeostasis membrane protein CopD | - |
| G5577_RS04485 | 947304..947675 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| G5577_RS04490 | 947813..948043 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| G5577_RS04495 | 948155..948805 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| G5577_RS04500 | 948830..949492 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150875 NZ_CP049192:c945936-945833 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT150875 NZ_CP049192:945828-946029 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
