Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1824433..1824667 | Replicon | chromosome |
| Accession | NZ_CP049177 | ||
| Organism | Shigella sonnei strain 1205.3131 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1824563..1824666 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1824433..1824667 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O63_RS09040 | 1820988..1821650 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G6O63_RS09045 | 1821674..1822330 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G6O63_RS09050 | 1822432..1822662 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6O63_RS09055 | 1822801..1823175 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| G6O63_RS09060 | 1823179..1824051 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| G6O63_RS09065 | 1824064..1824405 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1824433..1824667 | - | 235 | - | - | Antitoxin |
| - | 1824563..1824666 | + | 104 | - | - | Toxin |
| G6O63_RS09070 | 1824798..1825874 | - | 1077 | WP_052987259.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| G6O63_RS09075 | 1825911..1826156 | - | 246 | Protein_1763 | IS1 family transposase | - |
| G6O63_RS09085 | 1827490..1827944 | - | 455 | Protein_1765 | IS1-like element IS1A family transposase | - |
| G6O63_RS09090 | 1827973..1828233 | - | 261 | WP_077447296.1 | excisionase | - |
| G6O63_RS09095 | 1828378..1829533 | + | 1156 | Protein_1767 | IS3-like element IS600 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 1818931..1851627 | 32696 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150794 NZ_CP049177:1824563-1824666 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT150794 NZ_CP049177:c1824667-1824433 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
