Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1574107..1574341 | Replicon | chromosome |
| Accession | NZ_CP049173 | ||
| Organism | Shigella sonnei strain 19.0820.1561 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1574108..1574211 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1574107..1574341 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O61_RS08180 | 1570482..1571237 | + | 756 | WP_001282649.1 | IS21-like element ISSso4 family helper ATPase IstB | - |
| G6O61_RS08185 | 1571379..1572607 | + | 1229 | WP_088895425.1 | IS3-like element IS2 family transposase | - |
| G6O61_RS08190 | 1572618..1572863 | + | 246 | Protein_1601 | IS1 family transposase | - |
| G6O61_RS08195 | 1572900..1573976 | + | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1574107..1574341 | + | 235 | - | - | Antitoxin |
| - | 1574108..1574211 | - | 104 | - | - | Toxin |
| G6O61_RS08200 | 1574369..1574710 | - | 342 | WP_000976476.1 | YebY family protein | - |
| G6O61_RS08205 | 1574723..1575595 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| G6O61_RS08210 | 1575599..1575973 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| G6O61_RS08215 | 1576112..1576342 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6O61_RS08220 | 1576444..1577100 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G6O61_RS08225 | 1577124..1577786 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 / ipaH9.8 | 1560062..1580881 | 20819 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150749 NZ_CP049173:c1574211-1574108 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT150749 NZ_CP049173:1574107-1574341 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
