Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3297506..3297740 | Replicon | chromosome |
| Accession | NZ_CP049167 | ||
| Organism | Shigella sonnei strain 09163633 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3297507..3297610 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3297506..3297740 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O57_RS16670 | 3293941..3294201 | + | 261 | WP_077447296.1 | excisionase | - |
| G6O57_RS16675 | 3294230..3294684 | + | 455 | Protein_3251 | IS1-like element IS1A family transposase | - |
| G6O57_RS16680 | 3294779..3296006 | + | 1228 | WP_086558215.1 | IS3-like element IS2 family transposase | - |
| G6O57_RS16685 | 3296017..3296262 | + | 246 | Protein_3253 | IS1 family transposase | - |
| G6O57_RS16690 | 3296299..3297375 | + | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3297506..3297740 | + | 235 | - | - | Antitoxin |
| - | 3297507..3297610 | - | 104 | - | - | Toxin |
| G6O57_RS16695 | 3297768..3298109 | - | 342 | WP_000976476.1 | YebY family protein | - |
| G6O57_RS16700 | 3298122..3298994 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| G6O57_RS16705 | 3298998..3299372 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| G6O57_RS16710 | 3299511..3299741 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6O57_RS16715 | 3299843..3300499 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G6O57_RS16720 | 3300523..3301185 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | ipaH9.8 | 3284927..3298109 | 13182 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150692 NZ_CP049167:c3297610-3297507 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT150692 NZ_CP049167:3297506-3297740 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
