Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1323238..1323472 | Replicon | chromosome |
| Accession | NZ_CP049165 | ||
| Organism | Shigella sonnei strain 0401952027 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1323239..1323342 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1323238..1323472 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6O56_RS06845 | 1319672..1319932 | + | 261 | WP_077447296.1 | excisionase | - |
| G6O56_RS06850 | 1319961..1320415 | + | 455 | Protein_1343 | IS1-like element IS1A family transposase | - |
| G6O56_RS06855 | 1320510..1321738 | + | 1229 | WP_088895425.1 | IS3-like element IS2 family transposase | - |
| G6O56_RS06860 | 1321749..1321994 | + | 246 | Protein_1345 | IS1 family transposase | - |
| G6O56_RS06865 | 1322031..1323107 | + | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1323238..1323472 | + | 235 | - | - | Antitoxin |
| - | 1323239..1323342 | - | 104 | - | - | Toxin |
| G6O56_RS06870 | 1323500..1323841 | - | 342 | WP_000976476.1 | YebY family protein | - |
| G6O56_RS06875 | 1323854..1324726 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| G6O56_RS06880 | 1324730..1325104 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| G6O56_RS06885 | 1325243..1325473 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6O56_RS06890 | 1325575..1326231 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G6O56_RS06895 | 1326255..1326917 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 / ipaH9.8 | 1296277..1388122 | 91845 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150665 NZ_CP049165:c1323342-1323239 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT150665 NZ_CP049165:1323238-1323472 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
