Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2536341..2536510 | Replicon | chromosome |
| Accession | NZ_CP049154 | ||
| Organism | Cronobacter sakazakii strain C105731 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2536345..2536448 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2536341..2536510 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4U59_RS11765 (G4U59_11720) | 2531540..2531779 | + | 240 | WP_004386676.1 | YebV family protein | - |
| G4U59_RS11770 (G4U59_11725) | 2531904..2532095 | + | 192 | WP_004386675.1 | YebW family protein | - |
| G4U59_RS11775 (G4U59_11730) | 2532096..2532740 | - | 645 | WP_105944385.1 | metallophosphoesterase | - |
| G4U59_RS11785 | 2533098..2533190 | - | 93 | WP_012124476.1 | hypothetical protein | - |
| G4U59_RS11790 (G4U59_11735) | 2533536..2533871 | - | 336 | WP_004386671.1 | hypothetical protein | - |
| G4U59_RS11795 (G4U59_11740) | 2534069..2535238 | - | 1170 | WP_216295942.1 | acyltransferase | - |
| G4U59_RS11800 (G4U59_11745) | 2535235..2535489 | - | 255 | WP_134871580.1 | hypothetical protein | - |
| G4U59_RS11805 (G4U59_11750) | 2535929..2536204 | - | 276 | WP_105944387.1 | hypothetical protein | - |
| - | 2536341..2536510 | + | 170 | - | - | Antitoxin |
| - | 2536345..2536448 | - | 104 | - | - | Toxin |
| G4U59_RS11810 (G4U59_11755) | 2536587..2536925 | - | 339 | WP_004386669.1 | YebY family protein | - |
| G4U59_RS11815 (G4U59_11760) | 2536940..2537809 | - | 870 | WP_216295943.1 | copper homeostasis membrane protein CopD | - |
| G4U59_RS11820 (G4U59_11765) | 2537814..2538188 | - | 375 | WP_007868632.1 | CopC domain-containing protein YobA | - |
| G4U59_RS11825 (G4U59_11770) | 2538335..2538565 | + | 231 | WP_104658196.1 | DNA polymerase III subunit theta | - |
| G4U59_RS11830 (G4U59_11775) | 2538638..2539300 | + | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| G4U59_RS11835 (G4U59_11780) | 2539297..2541360 | - | 2064 | WP_105944809.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150634 NZ_CP049154:c2536448-2536345 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 170 bp
>AT150634 NZ_CP049154:2536341-2536510 [Cronobacter sakazakii]
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCA
GCAAAAAGCG
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCA
GCAAAAAGCG
