Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3923752..3923920 | Replicon | chromosome |
| Accession | NZ_CP049144 | ||
| Organism | Cronobacter sakazakii strain C79 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3923755..3923858 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3923752..3923920 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4U62_RS18570 (G4U62_18540) | 3919125..3920567 | + | 1443 | WP_148736170.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G4U62_RS18575 (G4U62_18545) | 3920680..3920919 | + | 240 | WP_148736169.1 | YebV family protein | - |
| G4U62_RS18580 (G4U62_18550) | 3921044..3921235 | + | 192 | WP_004386675.1 | YebW family protein | - |
| G4U62_RS18585 (G4U62_18555) | 3921236..3921880 | - | 645 | WP_148736168.1 | metallophosphoesterase | - |
| G4U62_RS18590 | 3922239..3922331 | - | 93 | WP_004386672.1 | hypothetical protein | - |
| G4U62_RS18595 (G4U62_18560) | 3922677..3923012 | - | 336 | WP_004386671.1 | hypothetical protein | - |
| G4U62_RS18600 (G4U62_18565) | 3922966..3923526 | - | 561 | WP_032968251.1 | hypothetical protein | - |
| - | 3923752..3923920 | + | 169 | - | - | Antitoxin |
| - | 3923755..3923858 | - | 104 | - | - | Toxin |
| G4U62_RS18605 (G4U62_18570) | 3923997..3924335 | - | 339 | WP_012124470.1 | YebY family protein | - |
| G4U62_RS18610 (G4U62_18575) | 3924350..3925219 | - | 870 | WP_148736167.1 | copper homeostasis membrane protein CopD | - |
| G4U62_RS18615 (G4U62_18580) | 3925224..3925598 | - | 375 | WP_148736166.1 | CopC domain-containing protein YobA | - |
| G4U62_RS18620 (G4U62_18585) | 3925745..3925975 | + | 231 | WP_104658196.1 | DNA polymerase III subunit theta | - |
| G4U62_RS18625 (G4U62_18590) | 3926048..3926710 | + | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| G4U62_RS18630 (G4U62_18595) | 3926707..3928770 | - | 2064 | WP_148736165.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150622 NZ_CP049144:c3923858-3923755 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT150622 NZ_CP049144:3923752-3923920 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
