Detailed information of TA system TA150500

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): parDE/-
• Location: 40282..40658
• Replicon: plasmid p2
• Accession: NZ_CP049102
• Organism: Escherichia coli strain EC28

Toxin (Protein)

• Gene name: parE
• Uniprot ID: A0A075MDK3
• Locus tag: G5V60_RS24485
• Protein ID: WP_000969988.1
• Coordinates: 40282..40464 (-)
• Length: 61 a.a.

Antitoxin (Protein)

• Gene name: parD
• Uniprot ID: -
• Locus tag: G5V60_RS24490
• Protein ID: WP_001324224.1
• Coordinates: 40461..40658 (-)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
G5V60_RS24475	38281..39315	-	1035	WP_001190234.1	3-deoxy-7-phosphoheptulonate synthase	-
G5V60_RS24480	39875..40183	-	309	WP_000377483.1	hypothetical protein	-
G5V60_RS24485	40282..40464	-	183	WP_000969988.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
G5V60_RS24490	40461..40658	-	198	WP_001324224.1	toxin-antitoxin system protein	Antitoxin
G5V60_RS24495	41340..42614	+	1275	WP_000489609.1	HlyD family secretion protein	-
G5V60_RS24500	42589..44703	+	2115	WP_001183604.1	peptidase domain-containing ABC transporter	-
G5V60_RS24505	44873..45184	-	312	WP_001259758.1	colicin V	-
G5V60_RS24510	45162..45398	-	237	WP_001323890.1	colicin V immunity protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Conjugative plasmid	tet(A) / sul2 / aph(3'')-Ib / aph(6)-Id / blaTEM-1B / sitABCD	iroB / iroC / iroD / iroE / iroN / vat / iutA / iucD / iucC / iucB / iucA	1..168051	168051

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-123)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (13-74)

Sequences

Toxin

Protein

• Length: 61 a.a.
• Molecular weight: 6931.07 Da
• Isoelectric Point: 4.5349

>T150500 WP_000969988.1 NZ_CP049102:c40464-40282 [Escherichia coli]
MMEIFWTMLASQDRKRIREYIAEQNLIAAIELDERIGCSASLLFSLSFISVQVHDNIITV

Nucleotide

• Length: 183 bp

>T150500 NZ_CP064707:c2077646-2077221 [Bradyrhizobium sp. 131]
GTGAATCTACTGCTCGACACCAACGTGTTGTCGGAGGTCCAGAGGCCCGCCCCTTCGCCGAAAGTCTTGTCATGGCTTGA
TACGATCGACGAGGATCGTGCGTTCATCAGCGCGGCATCGATCGCCGAGCTTCGTCGCGGCATCGCGTTGCTGGAGGACG
GCCGTCGCCGTGCAGCACTGGCCGCCTGGCTTGCCCGCGATCTGCCGGAGCGTTTTGCCGGGCGCACACTGCCGATCGAC
CACGCGGTCGCGGAACGCTGGGGTGACCTGATGGCTCAGAGTCGCAGAAGCGGTCTCGCATTGTCTGTCATGGACGGCTT
CTTTGCCGCGACCGCGCTGGCAAACAACCTCATGCTCGTCACGCGCAATGTGAAGGATTTTGCGGTATTCGGCGTGCCGC
TGCTGAACCCGTGGGACAACCCATAG

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 7658.53 Da
• Isoelectric Point: 7.2046

>AT150500 WP_001324224.1 NZ_CP049102:c40658-40461 [Escherichia coli]
MDRNGSQLIRDFMRQTVERQHNTWFRDQVEAGRQQLERGDVLPHDMVESSAAAWRDEMSRKVAGK

Nucleotide

• Length: 198 bp

>AT150500 NZ_CP064707:c2077921-2077643 [Bradyrhizobium sp. 131]
ATGACGGAACACACTGCACCAGATTCACCAGCGACGGACTCGTGGACGCTTGCCAACGCCAAGGCCCGGCTCTCCGAGGT
GATCGATCGTGCCCAAGCCGGCCCGCAAATCATCACCCGACACGGCAAGCCCAACGCGGTGATCGTTTCCGTCGAGGAAT
GGGCGCGCAAGACGGCGCGCAAAGGTACCTTGGCCGAATTCCTGCTGGCTTCGCCGCTGCGCAGCGGCGACCTCGAGCTT
GAACGCGTTCACGACGCGCCGCACGACGAGCTGCCGTGA

Structures

Toxin

• AlphaFold DB: A0A075MDK3