Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2250981..2251249 | Replicon | chromosome |
| Accession | NZ_CP049101 | ||
| Organism | Escherichia coli strain EC28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2251109..2251211 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2250981..2251249 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5V60_RS10850 | 2247534..2248196 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| G5V60_RS10855 | 2248220..2248876 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| G5V60_RS10860 | 2248978..2249208 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G5V60_RS10865 | 2249347..2249721 | + | 375 | WP_164699369.1 | CopC domain-containing protein YobA | - |
| G5V60_RS10870 | 2249725..2250597 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| G5V60_RS10875 | 2250610..2250951 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2250981..2251249 | - | 269 | - | - | Antitoxin |
| - | 2251109..2251211 | + | 103 | - | - | Toxin |
| G5V60_RS10880 | 2251346..2252002 | + | 657 | WP_001524821.1 | protein-serine/threonine phosphatase | - |
| G5V60_RS10885 | 2252003..2252194 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G5V60_RS10890 | 2252299..2252535 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G5V60_RS10895 | 2252652..2254091 | - | 1440 | WP_024186908.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T150485 NZ_CP049101:2251109-2251211 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT150485 NZ_CP049101:c2251249-2250981 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
