Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2296710..2296978 | Replicon | chromosome |
| Accession | NZ_CP049077 | ||
| Organism | Escherichia coli strain p11A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2296838..2296940 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2296710..2296978 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G6P89_RS11160 | 2293263..2293925 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G6P89_RS11165 | 2293949..2294605 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| G6P89_RS11170 | 2294707..2294937 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G6P89_RS11175 | 2295076..2295450 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G6P89_RS11180 | 2295454..2296326 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| G6P89_RS11185 | 2296339..2296680 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2296710..2296978 | - | 269 | - | - | Antitoxin |
| - | 2296838..2296940 | + | 103 | - | - | Toxin |
| G6P89_RS11190 | 2297075..2297731 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| G6P89_RS11195 | 2297732..2297923 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G6P89_RS11200 | 2298028..2298264 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G6P89_RS11205 | 2298381..2299820 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2216163..2312817 | 96654 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T150357 NZ_CP049077:2296838-2296940 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT150357 NZ_CP049077:c2296978-2296710 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
