Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 994001..994210 | Replicon | chromosome |
| Accession | NZ_CP049046 | ||
| Organism | Enterobacter hormaechei strain Y233 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 994094..994197 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 994001..994210 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5B34_RS04790 | 990538..991200 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| G5B34_RS04795 | 991225..991875 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| G5B34_RS04800 | 991987..992217 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| G5B34_RS04805 | 992355..992726 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| G5B34_RS04810 | 992728..993597 | + | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| G5B34_RS04815 | 993614..993952 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 994001..994210 | - | 210 | - | - | Antitoxin |
| G5B34_RS04820 | 994078..994275 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 994094..994197 | + | 104 | - | - | Toxin |
| G5B34_RS04825 | 994321..995301 | - | 981 | WP_164691846.1 | VirK/YbjX family protein | - |
| G5B34_RS04830 | 995469..996113 | + | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| G5B34_RS04835 | 996148..996387 | - | 240 | WP_003859885.1 | YebV family protein | - |
| G5B34_RS04840 | 996494..997942 | - | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150329 NZ_CP049046:994094-994197 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT150329 NZ_CP049046:c994210-994001 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
