Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 1205646..1206184 | Replicon | chromosome |
Accession | NZ_CP049045 | ||
Organism | Pseudomonas sp. BIOMIG1BAC |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A6G6ZTT3 |
Locus tag | ATY02_RS05460 | Protein ID | WP_068575728.1 |
Coordinates | 1205906..1206184 (+) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | ATY02_RS05455 | Protein ID | WP_083236103.1 |
Coordinates | 1205646..1205909 (+) | Length | 88 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
ATY02_RS05440 | 1201610..1203913 | - | 2304 | WP_068575721.1 | TonB-dependent siderophore receptor | - |
ATY02_RS05445 | 1204122..1204802 | + | 681 | WP_068575723.1 | Fe2+-dependent dioxygenase | - |
ATY02_RS05450 | 1204806..1205591 | + | 786 | WP_068575724.1 | sel1 repeat family protein | - |
ATY02_RS05455 | 1205646..1205909 | + | 264 | WP_083236103.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
ATY02_RS05460 | 1205906..1206184 | + | 279 | WP_068575728.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
ATY02_RS05465 | 1206262..1207425 | - | 1164 | WP_068575730.1 | type III PLP-dependent enzyme | - |
ATY02_RS05470 | 1208103..1209260 | - | 1158 | WP_068575732.1 | ABC transporter ATP-binding protein | - |
ATY02_RS05475 | 1209257..1209925 | - | 669 | WP_068575734.1 | ABC transporter permease | - |
ATY02_RS05480 | 1209938..1210831 | - | 894 | WP_068575736.1 | glycine betaine ABC transporter substrate-binding protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10787.55 Da Isoelectric Point: 10.8284
>T150323 WP_068575728.1 NZ_CP049045:1205906-1206184 [Pseudomonas sp. BIOMIG1BAC]
MRQLKWTSKALSDLARLFEFLAQVNRSAAARTVQSLVRAPDALLSNPRLGEQLEEFKPKDVRRLLVGHYEVRYEIQGMVL
SILRIWHVREDR
MRQLKWTSKALSDLARLFEFLAQVNRSAAARTVQSLVRAPDALLSNPRLGEQLEEFKPKDVRRLLVGHYEVRYEIQGMVL
SILRIWHVREDR
Download Length: 279 bp
>T150323 NZ_CP064674:2441139-2441423 [Salmonella sp. SJTUF14076]
ATGACTTATAAGCTGGCATTTAACGAATCTGCACTAAAAGAGTGGAAAAAACTGGGTCATACCATACAGGAACAGTTTAA
AAAAAAGCTACGGGAACGACTCGAAAACCCTCGGGTTCCTGCTTCGCAATTACATGGAAGAAAGGATCAGTACAAAATTA
AGCTGCGTGGTGCAGGATACAGACTGGTGTACAGCGTCGAAGATGAAATTATCACGGTAACTGTCATTGGTGTTGGAAAG
CGTGAAAATGATGCCGTCTACAAAATGACACGGCACAGAAGCTAA
ATGACTTATAAGCTGGCATTTAACGAATCTGCACTAAAAGAGTGGAAAAAACTGGGTCATACCATACAGGAACAGTTTAA
AAAAAAGCTACGGGAACGACTCGAAAACCCTCGGGTTCCTGCTTCGCAATTACATGGAAGAAAGGATCAGTACAAAATTA
AGCTGCGTGGTGCAGGATACAGACTGGTGTACAGCGTCGAAGATGAAATTATCACGGTAACTGTCATTGGTGTTGGAAAG
CGTGAAAATGATGCCGTCTACAAAATGACACGGCACAGAAGCTAA
Antitoxin
Download Length: 88 a.a. Molecular weight: 9691.09 Da Isoelectric Point: 5.0878
>AT150323 WP_083236103.1 NZ_CP049045:1205646-1205909 [Pseudomonas sp. BIOMIG1BAC]
MPATKVLTAHIPLDLADKVDQLASRLERSRAWIVKQALVAWVDQEEERRRLTLEALADVDAGRVVDHQSVLAWAESLSGD
NPLPLPK
MPATKVLTAHIPLDLADKVDQLASRLERSRAWIVKQALVAWVDQEEERRRLTLEALADVDAGRVVDHQSVLAWAESLSGD
NPLPLPK
Download Length: 264 bp
>AT150323 NZ_CP064674:2440901-2441149 [Salmonella sp. SJTUF14076]
ATGGCATTTCAAATTTTAACGACTACTGCAGCAAGCATTACAGAACTGAAACGTGACCCAATGGGAACTTTCAATGCCGG
AGATGGCGCTCCAGTTGCCATTCTTAACCGTAATGAACCGGCTTTCTACTGTGTGCCTCCGGCACTTTATGCTCATCTTA
TGGATATTCTTGAGGATGAAGAACTCGGTCGTATTATCGATGAGCGTGCGAATGAACGCGTCATTGAGGTCAACATTGAT
GACTTATAA
ATGGCATTTCAAATTTTAACGACTACTGCAGCAAGCATTACAGAACTGAAACGTGACCCAATGGGAACTTTCAATGCCGG
AGATGGCGCTCCAGTTGCCATTCTTAACCGTAATGAACCGGCTTTCTACTGTGTGCCTCCGGCACTTTATGCTCATCTTA
TGGATATTCTTGAGGATGAAGAACTCGGTCGTATTATCGATGAGCGTGCGAATGAACGCGTCATTGAGGTCAACATTGAT
GACTTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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