Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-YefM
Location 2417518..2418020 Replicon chromosome
Accession NZ_CP049017
Organism Xanthomonas theicola strain CFBP 4691

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag G4Q83_RS11250 Protein ID WP_128419485.1
Coordinates 2417766..2418020 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag G4Q83_RS11245 Protein ID WP_128419486.1
Coordinates 2417518..2417769 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G4Q83_RS11220 2412954..2414090 + 1137 WP_128419490.1 tRNA epoxyqueuosine(34) reductase QueG -
G4Q83_RS11225 2414099..2415430 + 1332 WP_128419489.1 exodeoxyribonuclease VII large subunit -
G4Q83_RS11230 2415473..2415874 + 402 WP_128419488.1 DUF2384 domain-containing protein -
G4Q83_RS11235 2415921..2416463 - 543 WP_128419487.1 lipocalin family protein -
G4Q83_RS11240 2416802..2417469 + 668 Protein_2212 site-specific integrase -
G4Q83_RS11245 2417518..2417769 + 252 WP_128419486.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
G4Q83_RS11250 2417766..2418020 + 255 WP_128419485.1 Txe/YoeB family addiction module toxin Toxin
G4Q83_RS11255 2418238..2418530 + 293 Protein_2215 transposase -
G4Q83_RS11260 2418851..2421724 - 2874 WP_128419506.1 EAL domain-containing protein -
G4Q83_RS11265 2421943..2422497 + 555 WP_128419484.1 RNA polymerase sigma factor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 2418238..2418501 263


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10129.63 Da        Isoelectric Point: 9.3050

>T150295 WP_128419485.1 NZ_CP049017:2417766-2418020 [Xanthomonas theicola]
VILRFSDDAWEDYLYWQQADKKLLKRINELIKAIQRDPFQGIGKPEPLRHALAGYWSRRINDEHRIVYKVEGDVLMIAQA
RYHY

Download         Length: 255 bp

>T150295 NZ_CP064671:717917-718300 [Salmonella sp. SJTUF14152]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCACGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGTATTGATATTCTCCGGGCTCGCCGGGCAACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGCATCAGGAGTCGAAACGATGCAACTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9307.51 Da        Isoelectric Point: 4.7361

>AT150295 WP_128419486.1 NZ_CP049017:2417518-2417769 [Xanthomonas theicola]
MDTITYTAARASLADTMDRVINDHEPVIITRNSQQSVVMLSLEDYKAMEETAYLLRSPKNAQRLLRSIAQLEAGNGQVRE
PAE

Download         Length: 252 bp

>AT150295 NZ_CP064671:717459-717827 [Salmonella sp. SJTUF14152]
GTGTCAGACACACTCCCCGGGACAACGCTTCCCGACGACAATAACGACCGCACCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTTGGTGCCCGTCTGGTACAGGAAGGCAATCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGGCGGT
TCAGCGACGCGGATTCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCGAAGCCGACACCCTCGGCAGTTG
TGGCTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References