Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) slvAT/RES-Xre
Location 986802..987703 Replicon chromosome
Accession NZ_CP049017
Organism Xanthomonas theicola strain CFBP 4691

Toxin (Protein)


Gene name slvT Uniprot ID -
Locus tag G4Q83_RS04330 Protein ID WP_128421933.1
Coordinates 987170..987703 (+) Length 178 a.a.

Antitoxin (Protein)


Gene name slvA Uniprot ID -
Locus tag G4Q83_RS04325 Protein ID WP_128421932.1
Coordinates 986802..987173 (+) Length 124 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G4Q83_RS04310 982419..984170 + 1752 WP_128420567.1 ABC transporter permease subunit -
G4Q83_RS04315 984188..985507 + 1320 WP_128420566.1 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein -
G4Q83_RS04320 985580..986266 - 687 Protein_852 IS3 family transposase -
G4Q83_RS04325 986802..987173 + 372 WP_128421932.1 MbcA/ParS/Xre antitoxin family protein Antitoxin
G4Q83_RS04330 987170..987703 + 534 WP_128421933.1 RES family NAD+ phosphorylase Toxin
G4Q83_RS04335 987762..988764 - 1003 Protein_855 hypothetical protein -
G4Q83_RS04340 988775..989573 - 799 Protein_856 IS5 family transposase -
G4Q83_RS04345 990058..990552 + 495 WP_128421655.1 CinA family protein -
G4Q83_RS04350 990582..992258 + 1677 WP_128421657.1 ubiquinone biosynthesis protein UbiB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 985580..999712 14132
- inside IScluster/Tn - - 985580..989573 3993


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(15-168)

Antitoxin

Antitoxin Xre/MbcA/ParS-like, toxin-binding domain

(71-120)


Sequences

Toxin        


Download         Length: 178 a.a.        Molecular weight: 19489.89 Da        Isoelectric Point: 4.6401

>T150292 WP_128421933.1 NZ_CP049017:987170-987703 [Xanthomonas theicola]
MIEATIGEGDDEAHYRVIVPAYAGIPLSGMGAARQGGRFNRPGQEAFYLSVDDATALAEYKQDNPWLPPGTICTFFIRQL
RVADFSAGFDSARWPPLWADFAVDWRAEWFGKAVEPPTWYMADDVVAAGLDGILFPSQARPGGTNLVIYRSSERSPSQLR
VYDPDGALHTLAPPARR

Download         Length: 534 bp

>T150292 NZ_CP064666:c4551171-4550797 [Salmonella sp. SJTUF14154]
ATGGTCAAAGGGTCTGCGCTTTTTGATACCAATATCCTCATCGACCTGTTTAGCGGTCGAATTGAAGCGAAACATGCGCT
GGAAGCGTATCCGCCACAGAATGCGATTAGCCTTATCACATGGATGGAAGTGATGGTGGGTGCTAAGAAATATCATCAGG
AAAACCGCACGCGCATTGCATTAAGTGCGTTCAATATTATTGGCGTAACACAGGAAATCGCGGAGCGAAGCGTCATTGTC
AGGCAGGAGTATGGCATGAAACTCCCGGATGCGATCATTCTGGCCACTGCACAAGTCCATCGTTGTGAGCTTGTGACGCG
TAATACAAAAGACTTTGCCGATATTCCGGGAGTGATCACGCCGTATCACTTGTAG

Antitoxin


Download         Length: 124 a.a.        Molecular weight: 13801.70 Da        Isoelectric Point: 5.7378

>AT150292 WP_128421932.1 NZ_CP049017:986802-987173 [Xanthomonas theicola]
MSTVMQQPFVEWFREPDTQYLSPARVGDFFGFRVQELAERAHVHRNTPTTRPQAPQLQKYLQEMIRVLAVATEMTGDVER
AAFLLRNEPLRAFGYKTADTLVQEGKAEAVIAYLESLAGGAAG

Download         Length: 372 bp

>AT150292 NZ_CP064666:c4551413-4551171 [Salmonella sp. SJTUF14154]
ATGATGGCTGGGATGGATATGGGCAGAATTTTACTCGATTTATCAGATGATGTGATTAAACGGCTTGACGATCTCAAGGT
GCAACGCAACCTACCTCGTGCAGAACTCTTGCGGGAGGCCGTTGAGCAGTATCTGGAAAGACAGGATCGGGCTGAGACCA
CAATTTCGAAAGCATTGGGGCTCTGGCAAGGCTGTGAGGAAGATGGCGTTGAATACCAACGTAAACTTCGTGAGGAATGG
TAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References