Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 688478..688749 | Replicon | chromosome |
| Accession | NZ_CP048934 | ||
| Organism | Escherichia coli strain 190693 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 688516..688619 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 688478..688749 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5C00_RS03380 | 685635..687074 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G5C00_RS03385 | 687192..687428 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G5C00_RS03390 | 687533..687724 | + | 192 | WP_001296140.1 | YebW family protein | - |
| G5C00_RS03395 | 687725..688381 | - | 657 | WP_163510366.1 | protein-serine/threonine phosphatase | - |
| - | 688478..688749 | + | 272 | - | - | Antitoxin |
| - | 688516..688619 | - | 104 | - | - | Toxin |
| G5C00_RS03400 | 688777..689118 | - | 342 | WP_000976472.1 | YebY family protein | - |
| G5C00_RS03405 | 689131..690003 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| G5C00_RS03410 | 690007..690381 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G5C00_RS03415 | 690520..690750 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G5C00_RS03420 | 690852..691508 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| G5C00_RS03425 | 691532..692194 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 672638..712534 | 39896 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150249 NZ_CP048934:c688619-688516 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT150249 NZ_CP048934:688478-688749 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
