Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1994059..1994330 | Replicon | chromosome |
| Accession | NZ_CP048915 | ||
| Organism | Escherichia coli strain E2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1994189..1994292 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1994059..1994330 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5S48_RS09535 | 1990614..1991276 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G5S48_RS09540 | 1991300..1991956 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G5S48_RS09545 | 1992058..1992288 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G5S48_RS09550 | 1992427..1992801 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| G5S48_RS09555 | 1992805..1993677 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| G5S48_RS09560 | 1993690..1994031 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1994059..1994330 | - | 272 | - | - | Antitoxin |
| - | 1994189..1994292 | + | 104 | - | - | Toxin |
| G5S48_RS09565 | 1994427..1995083 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| G5S48_RS09570 | 1995084..1995275 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G5S48_RS09575 | 1995380..1995616 | - | 237 | WP_001295499.1 | YebV family protein | - |
| G5S48_RS09580 | 1995734..1997173 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1951146..2010168 | 59022 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T150178 NZ_CP048915:1994189-1994292 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT150178 NZ_CP048915:c1994330-1994059 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
