Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PanAT/DUF4065(antitoxin)
Location 3781119..3782044 Replicon chromosome
Accession NZ_CP048810
Organism Pseudomonas bijieensis strain L22-9

Toxin (Protein)


Gene name panT Uniprot ID -
Locus tag GN234_RS16515 Protein ID WP_176688782.1
Coordinates 3781718..3782044 (+) Length 109 a.a.

Antitoxin (Protein)


Gene name panA Uniprot ID -
Locus tag GN234_RS16510 Protein ID WP_176689598.1
Coordinates 3781119..3781646 (+) Length 176 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GN234_RS16490 3777145..3777417 + 273 WP_109751975.1 oxidative damage protection protein -
GN234_RS16500 3778503..3779498 + 996 WP_176688780.1 hypothetical protein -
GN234_RS16505 3779903..3780376 + 474 WP_176688781.1 Rha family transcriptional regulator -
GN234_RS16510 3781119..3781646 + 528 WP_176689598.1 SocA family protein Antitoxin
GN234_RS16515 3781718..3782044 + 327 WP_176688782.1 hypothetical protein Toxin
GN234_RS16520 3782298..3782627 + 330 WP_176688783.1 DHCW motif cupin fold protein -
GN234_RS16525 3782689..3783096 + 408 WP_176688784.1 hypothetical protein -
GN234_RS16530 3783297..3784346 + 1050 WP_176688785.1 DUF1016 family protein -
GN234_RS16535 3784447..3785052 + 606 WP_109751971.1 biliverdin-producing heme oxygenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Antitoxin SocA-like, Panacea domain

(18-128)


Sequences

Toxin        


Download         Length: 109 a.a.        Molecular weight: 12428.03 Da        Isoelectric Point: 7.1146

>T150032 WP_176688782.1 NZ_CP048810:3781718-3782044 [Pseudomonas bijieensis]
MNDPVYSHEHGYDGVLAVNISSIKPGVYYDPSCILTTNCHPFVRWESWVVYKEAAVFDASRLDLKVDAGEIVSHHPVSDD
LYNRVRAGFEISRHLPRKIGRFIRQNHF

Download         Length: 327 bp

>T150032 NZ_CP064377:1678149-1678418 [Achromobacter xylosoxidans]
ATGAAGTGGACCAGCAAGGCGCTTTCCGATCTGGCGCGCTTGCATGAATTCCTGGCGGCGGTGAATAGGCCCGCGGCCGT
ACGGGCTGTGCAAGCGCTGGTCAAGGCTTCAAGTGTTTTGCCGACCAACTCCCGCATTGGCGAGCAGCTATTTCAGTTCG
AACCGCGCGAGGTACGCAGGATATTGGTCGGGGAGTACGAAATACGTTACGAGATCCGGGATTCGATCATCTACGTATTG
CGACTGTGGCACACCCGGGAGAACCGCTGA

Antitoxin


Download         Length: 176 a.a.        Molecular weight: 20126.95 Da        Isoelectric Point: 5.3239

>AT150032 WP_176689598.1 NZ_CP048810:3781119-3781646 [Pseudomonas bijieensis]
MAAYFLQKRGGRMAYIKLMKLLYLADRESMDRYSAPMSHDSHVSMAQGPVLSTTLNLITGQIESPAWRSWVTSEAKFEVS
LSRELNDLELLDELSDADLEIMDHVWEQFGRMKRWELVDYTHSHLPEWVDPGRSSTPINPRAVFKALGKDEQQAELLARE
LFERKSLGRAVSELI

Download         Length: 528 bp

>AT150032 NZ_CP064377:1677877-1678143 [Achromobacter xylosoxidans]
ATGAGTCCCGCAACCAAGGTGCTGACCGCACATGTGCCGCTTCCGTTGGCCGAGAAGGTCGATCAGATGGCTGTGCGCCT
GGACCGATCTCGCGGCTGGATCGTGAAGCAGGCACTGTCCGCTTGGATTGCCCAAGAGGAGGAACGTGACAAGCTCACCG
AGCAAGCGCTTGCTGACGTGGATGCTGGTCGGATTGTGGATGACCAAGCCGTGCAAGCCTGGGCGGAGAGCCTGGGCTCT
GACCAGCCATTGCCGCTGCCGCGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References