Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2824599..2824753 | Replicon | chromosome |
| Accession | NZ_CP048736 | ||
| Organism | Enterobacter sp. T2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2824615..2824718 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2824599..2824753 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G0034_RS13485 | 2820875..2822317 | + | 1443 | WP_045134186.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G0034_RS13490 | 2822424..2822663 | + | 240 | WP_008500472.1 | YebV family protein | - |
| G0034_RS13495 | 2822698..2823342 | - | 645 | WP_179120958.1 | protein-serine/threonine phosphatase | - |
| G0034_RS13500 | 2823510..2824451 | + | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| - | 2824599..2824753 | + | 155 | - | - | Antitoxin |
| - | 2824615..2824718 | - | 104 | - | - | Toxin |
| G0034_RS13505 | 2824857..2825195 | - | 339 | WP_014884299.1 | YebY family protein | - |
| G0034_RS13510 | 2825212..2826081 | - | 870 | WP_179120959.1 | copper homeostasis membrane protein CopD | - |
| G0034_RS13515 | 2826083..2826454 | - | 372 | WP_179120960.1 | CopC domain-containing protein YobA | - |
| G0034_RS13520 | 2826592..2826822 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| G0034_RS13525 | 2826933..2827583 | + | 651 | WP_050861725.1 | carbon-nitrogen hydrolase family protein | - |
| G0034_RS13530 | 2827608..2828270 | + | 663 | WP_179120961.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149937 NZ_CP048736:c2824718-2824615 [Enterobacter sp. T2]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT149937 NZ_CP048736:2824599-2824753 [Enterobacter sp. T2]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
