Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 1861858..1862380 Replicon chromosome
Accession NZ_CP048711
Organism Kineobactrum salinum strain M2

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag G3T16_RS07960 Protein ID WP_163494582.1
Coordinates 1861858..1862121 (+) Length 88 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag G3T16_RS07965 Protein ID WP_163494583.1
Coordinates 1862111..1862380 (+) Length 90 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G3T16_RS07940 1857139..1857717 + 579 WP_163494578.1 hypothetical protein -
G3T16_RS07945 1857618..1858262 + 645 WP_163494579.1 D-2-hydroxyacid dehydrogenase -
G3T16_RS07950 1858329..1859861 + 1533 WP_197911960.1 YdiU family protein -
G3T16_RS07955 1860186..1861679 + 1494 WP_163494581.1 Fic family protein -
G3T16_RS07960 1861858..1862121 + 264 WP_163494582.1 BrnT family toxin Toxin
G3T16_RS07965 1862111..1862380 + 270 WP_163494583.1 CopG family transcriptional regulator Antitoxin
G3T16_RS07970 1862432..1862821 + 390 WP_163494584.1 hypothetical protein -
G3T16_RS07975 1863037..1864116 - 1080 WP_163494585.1 HesA/MoeB/ThiF family protein -
G3T16_RS07980 1864113..1865591 - 1479 WP_197911961.1 thiamine phosphate synthase -
G3T16_RS07985 1865588..1866367 - 780 WP_163494586.1 thiazole synthase -
G3T16_RS07990 1866368..1866568 - 201 WP_163494587.1 sulfur carrier protein ThiS -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(6-81)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 88 a.a.        Molecular weight: 10131.28 Da        Isoelectric Point: 4.5517

>T149917 WP_163494582.1 NZ_CP048711:1861858-1862121 [Kineobactrum salinum]
MSDFEYDDDKSQANLEKDGIDFLDAQALWNDPDLLEIRAKSEDEPRFLVVGLVGQKHWSAVVTYRNGTVRLISVRRSRKR
EVELYES

Download         Length: 264 bp

>T149917 NZ_CP064334:1405051-1405347 [Xylella fastidiosa subsp. fastidiosa]
ATGGTCGAACTCATCAAAACCAGCACTTTTGATGCTTGGATAAACAGCTTACGTGACCGCAAAGCAGCCGCCAGAATTCA
AGCGCGTCTTGATCGGCTCGCACTTGGCAATCCCGGCGACGTGAAGCCTGTGGGTGCTGGCATCTCAGAAATGAGGATCG
ACCATGGGCCCGGATATCGGATCTATTTTATGAAGCATGGTGCAGTACTGATTCTCTTACTTTGCGGTGGCGATAAATCG
TCACAAGTACGAGATATAGAGCAGGCTAAGGCACTGGCTGCACTGTGGAAGGATTAG

Antitoxin


Download         Length: 90 a.a.        Molecular weight: 10019.38 Da        Isoelectric Point: 9.8407

>AT149917 WP_163494583.1 NZ_CP048711:1862111-1862380 [Kineobactrum salinum]
MKAKDFDKKFDQGKKDIIDDLDLSTARRANQEQKRINVDFPTWVVESLDREAARIGVTRQSIIKVWLVERLKAEAANKPL
NGDAAGGAH

Download         Length: 270 bp

>AT149917 NZ_CP064334:1405351-1405656 [Xylella fastidiosa subsp. fastidiosa]
ATGAATAATGAGACTTTTAGTCGATACGACACCGCTGACTATCTCAAAACCGAAGAAGATATTGCGGCTTATATGGAAGC
CGTCATGGAAGAAGGTGGTAGGGATAATCCTGCTTTTATTGCACGGGCACTTGGTGCTGTCGCTCGTGCTCGTAATTTAA
GTCAGCTTGCTCGTGACGTTGGCATGTCCAGGCAAGGACTAGACAAGGCACTCTCTAACGACGGCAACCCAAGCTTCTCA
ACCATCTTAAAAGTGGCTAAAGCGCTTGGTTTACGGATGTCATTCACACCTTCCTCTATGAGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References