Detailed information of TA system TA149914

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC(toxin)
• Location: 5028421..5029037
• Replicon: chromosome
• Accession: NZ_CP048696
• Organism: Enterobacter hormaechei strain Eho-E4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: GVI76_RS24425
• Protein ID: WP_015569913.1
• Coordinates: 5028421..5028792 (-)
• Length: 124 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: A0A6G4MTK3
• Locus tag: GVI76_RS24430
• Protein ID: WP_015569912.1
• Coordinates: 5028795..5029037 (-)
• Length: 81 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
GVI76_RS24410	5025921..5026823	+	903	WP_014072386.1	formate dehydrogenase subunit beta	-
GVI76_RS24415	5026820..5027455	+	636	WP_015569914.1	formate dehydrogenase cytochrome b556 subunit	-
GVI76_RS24420	5027452..5028381	+	930	WP_003861956.1	formate dehydrogenase accessory protein FdhE	-
GVI76_RS24425	5028421..5028792	-	372	WP_015569913.1	PIN domain-containing protein	Toxin
GVI76_RS24430	5028795..5029037	-	243	WP_015569912.1	ribbon-helix-helix domain-containing protein	Antitoxin
GVI76_RS24435	5029236..5030156	+	921	WP_015569911.1	alpha/beta hydrolase	-
GVI76_RS24440	5030165..5031106	-	942	WP_015569910.1	fatty acid biosynthesis protein FabY	-
GVI76_RS24445	5031151..5031588	-	438	WP_015569909.1	D-tyrosyl-tRNA(Tyr) deacylase	-
GVI76_RS24450	5031585..5032466	-	882	WP_003861949.1	virulence factor BrkB family protein	-
GVI76_RS24455	5032460..5033059	-	600	WP_003861947.1	glucose-1-phosphatase	-
GVI76_RS24460	5033178..5033978	-	801	WP_003861944.1	DeoR/GlpR family DNA-binding transcription regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (6-115)

Antitoxin

• Ribbon-helix-helix protein, CopG (12-49)

Sequences

Toxin

Protein

• Length: 124 a.a.
• Molecular weight: 13767.90 Da
• Isoelectric Point: 6.4882

>T149914 WP_015569913.1 NZ_CP048696:c5028792-5028421 [Enterobacter hormaechei]
MEHMAVFDTNILIDLFNNRIEAADAIEHTASHRAISLITWMEVMVSARRHGHEAKTAAVMGAFEIIDVSRDIAERSVLLR
EKHGMKLPDAIILATAQSRKCPLISRNTKDFAGIDEVLTPYQV

Nucleotide

• Length: 372 bp

>T149914 NZ_CP064334:457981-458283 [Xylella fastidiosa subsp. fastidiosa]
ATGGAGAAAGGCACATCTCACTATAAGCTACCAGTCGTCAAAGCCTTGGTGAAAGCTGGCAAGGTCAGGGCTACAGCGAC
CGCCTACCAAGGAGCACGTGAGCTCGGCATCAAAGATTTAACTGGAATGTGCACCGTTGTCTTGGCGCTCACGTCTGCCG
ACTTCTACAAGAGCATGACGACCTACGCGGATCACACAGTATTCCAGGATGTGTACCACGCCAAGACGGCAAGCGGTGAT
GAGGTGTACCTGAAGTTAACTGTCATTGATGACGTGTTGATTGTTTCCTTCAAGGAGTTATGA

Antitoxin

Protein

• Length: 81 a.a.
• Molecular weight: 9440.72 Da
• Isoelectric Point: 4.4076

>AT149914 WP_015569912.1 NZ_CP048696:c5029037-5028795 [Enterobacter hormaechei]
MSVLAELDMGRILIDLSDDVIQRLDNLKQLRNQPRAELLREAIELYLDQQSSSVIRNALGLWGDRKEDGLEYERKLREEW

Nucleotide

• Length: 243 bp

>AT149914 NZ_CP064334:458286-458687 [Xylella fastidiosa subsp. fastidiosa]
ATGAGATGTCCATGCTGCGGCGCGGCAGAACTGATCCACGACACGCGCGACATGCTTTACACCTACAAGAGCGAAACTAC
TAGTATCCCAACGGTGACCGGCGACTTCTGCCCGGCTTGTGGCGAAGTCGTCTTGGACCGTGAACATGGTGATCGTTACA
GCGAATTGGTCGGCTTGTTCCAACGTCAGGTGAATTCGGCCTACGTCGATCCTGGTTACATTACCAAGGTACGCCGGAAG
CTTGATCTCGACCAGCGGCAAGCTGCCGAACTGTTCGGTGGTGGTGTTAATGCTTTCTCACGTTACGAGAACGGTAAAAC
CAAGCCGCCGCTGTCTTTGGTTAAGTTATTCAAGCTTCTGGATCGCCACCCCGATTTGCTCAACGAAGTGAAGAGTTCCT
AA

Structures

Antitoxin

• AlphaFold DB: A0A6G4MTK3