Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2996632..2996841 | Replicon | chromosome |
| Accession | NZ_CP048696 | ||
| Organism | Enterobacter hormaechei strain Eho-E4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2996645..2996748 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2996632..2996841 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI76_RS14410 | 2992900..2994348 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GVI76_RS14415 | 2994455..2994694 | + | 240 | WP_003859885.1 | YebV family protein | - |
| GVI76_RS14420 | 2994729..2995373 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| GVI76_RS14425 | 2995541..2996521 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| GVI76_RS14430 | 2996567..2996764 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2996632..2996841 | + | 210 | - | - | Antitoxin |
| - | 2996645..2996748 | - | 104 | - | - | Toxin |
| GVI76_RS14435 | 2996890..2997228 | - | 339 | WP_003859787.1 | YebY family protein | - |
| GVI76_RS14440 | 2997245..2998114 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| GVI76_RS14445 | 2998116..2998487 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| GVI76_RS14450 | 2998625..2998855 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GVI76_RS14455 | 2998967..2999617 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| GVI76_RS14460 | 2999642..3000304 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149902 NZ_CP048696:c2996748-2996645 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT149902 NZ_CP048696:2996632-2996841 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
