Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 200086..200614 | Replicon | plasmid unnamed1 |
| Accession | NZ_CP048695 | ||
| Organism | Vibrio coralliilyticus OCN008 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | G3U99_RS26045 | Protein ID | WP_006958738.1 |
| Coordinates | 200086..200376 (-) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR02 |
| Locus tag | G3U99_RS26050 | Protein ID | WP_005377003.1 |
| Coordinates | 200366..200614 (-) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3U99_RS26000 | 195268..196392 | - | 1125 | WP_021458478.1 | cyclopropane fatty acyl phospholipid synthase | - |
| G3U99_RS26005 | 196632..196991 | + | 360 | WP_021458479.1 | hypothetical protein | - |
| G3U99_RS26010 | 197227..197541 | - | 315 | WP_021458480.1 | hypothetical protein | - |
| G3U99_RS26015 | 198011..198397 | + | 387 | WP_207623575.1 | ester cyclase | - |
| G3U99_RS26020 | 198410..198703 | + | 294 | Protein_187 | hypothetical protein | - |
| G3U99_RS26025 | 198700..198810 | + | 111 | WP_085058213.1 | DUF3265 domain-containing protein | - |
| G3U99_RS26030 | 198866..199165 | - | 300 | WP_021458752.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| G3U99_RS26035 | 199173..199415 | - | 243 | WP_005442033.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| G3U99_RS26040 | 199691..199927 | + | 237 | WP_021458677.1 | hypothetical protein | - |
| G3U99_RS26045 | 200086..200376 | - | 291 | WP_006958738.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| G3U99_RS26050 | 200366..200614 | - | 249 | WP_005377003.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| G3U99_RS26055 | 200946..201536 | + | 591 | WP_021458678.1 | Crp/Fnr family transcriptional regulator | - |
| G3U99_RS26060 | 201598..202044 | + | 447 | WP_019274826.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| G3U99_RS26065 | 202166..202921 | + | 756 | WP_021458679.1 | isocitrate lyase/phosphoenolpyruvate mutase family protein | - |
| G3U99_RS26070 | 203081..203518 | + | 438 | WP_085058204.1 | GNAT family N-acetyltransferase | - |
| G3U99_RS26075 | 203661..204212 | + | 552 | WP_021458681.1 | GNAT family N-acetyltransferase | - |
| G3U99_RS26080 | 204227..204445 | - | 219 | WP_141650602.1 | hypothetical protein | - |
| G3U99_RS26085 | 204703..205323 | + | 621 | WP_165579957.1 | LysE family translocator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..244689 | 244689 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11231.18 Da Isoelectric Point: 10.5339
>T149898 WP_006958738.1 NZ_CP048695:c200376-200086 [Vibrio coralliilyticus OCN008]
MTYKLDFKKSALKEWKKLGATLQQQFKKKLIERLDNPHVPASKLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMNRLDD
MTYKLDFKKSALKEWKKLGATLQQQFKKKLIERLDNPHVPASKLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMNRLDD
Download Length: 291 bp
>T149898 NZ_CP064330:c1581671-1581417 [Xylella fastidiosa subsp. fastidiosa]
ATGAAGCGTAAGCACGCTAAAACTCTCAGCGCTATATACACACGCCCTGTTTCGGCCAACATTCAATGGCGCGATATTGA
AGCGCTGTTCGTGGAGCTTGGAGCGAAAGTAGAAGAACGTGAAGGTTCTCGTATGTTGGTGCGACTGTTCGGTGAACGTC
GGATATTCCACCGGCCCCACCCTTCTCCTAACACTGACAAGGGTGCTGTTGAATCAATCCGAGCTTGGTTGAAATCGAAC
GGAGTTACACCATGA
ATGAAGCGTAAGCACGCTAAAACTCTCAGCGCTATATACACACGCCCTGTTTCGGCCAACATTCAATGGCGCGATATTGA
AGCGCTGTTCGTGGAGCTTGGAGCGAAAGTAGAAGAACGTGAAGGTTCTCGTATGTTGGTGCGACTGTTCGGTGAACGTC
GGATATTCCACCGGCCCCACCCTTCTCCTAACACTGACAAGGGTGCTGTTGAATCAATCCGAGCTTGGTTGAAATCGAAC
GGAGTTACACCATGA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9079.37 Da Isoelectric Point: 3.9610
>AT149898 WP_005377003.1 NZ_CP048695:c200614-200366 [Vibrio coralliilyticus OCN008]
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLAIAKERESEESISVNID
DL
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLAIAKERESEESISVNID
DL
Download Length: 249 bp
>AT149898 NZ_CP064330:c1581420-1581085 [Xylella fastidiosa subsp. fastidiosa]
ATGAAGAACATCATGACTATTGAGAGCTTTAAAGCCATCATTACCTATGATCCGGAGATCGACATGTTTCGCGGTGAATT
TGTGGGTATCAATGGTGGTGCTGATTTCTATGCAAAAGACCTTAAGGGTCTTCGTCGAGAAGGAGCTATTTCTCTGAAGG
TATTTTTGGAAGCCTGCAAAGAAGATAGCGTGGAACCACGTAAATGCTACTCAGGGAAGTTCAATGCAAGGATTTCTCCT
GAACTGCATGCTTTGGCTTCTGAAGCCGCAGCAGCACAGGGCATCAGTTTGAACCAATTTGTAGAACAAGCGATTCAGCA
TGAAGTCCACACCTGA
ATGAAGAACATCATGACTATTGAGAGCTTTAAAGCCATCATTACCTATGATCCGGAGATCGACATGTTTCGCGGTGAATT
TGTGGGTATCAATGGTGGTGCTGATTTCTATGCAAAAGACCTTAAGGGTCTTCGTCGAGAAGGAGCTATTTCTCTGAAGG
TATTTTTGGAAGCCTGCAAAGAAGATAGCGTGGAACCACGTAAATGCTACTCAGGGAAGTTCAATGCAAGGATTTCTCCT
GAACTGCATGCTTTGGCTTCTGAAGCCGCAGCAGCACAGGGCATCAGTTTGAACCAATTTGTAGAACAAGCGATTCAGCA
TGAAGTCCACACCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|