Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/Phd(antitoxin) |
| Location | 2938592..2939139 | Replicon | chromosome |
| Accession | NZ_CP048693 | ||
| Organism | Vibrio coralliilyticus OCN008 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | G3U99_RS14135 | Protein ID | WP_021458345.1 |
| Coordinates | 2938592..2938894 (-) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | G3U99_RS14140 | Protein ID | WP_021458344.1 |
| Coordinates | 2938882..2939139 (-) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3U99_RS14090 | 2934155..2934637 | - | 483 | WP_021458352.1 | YbaK/EbsC family protein | - |
| G3U99_RS14095 | 2934811..2935275 | - | 465 | WP_021458351.1 | DUF2846 domain-containing protein | - |
| G3U99_RS26285 | 2935383..2935472 | - | 90 | WP_072829120.1 | DUF3265 domain-containing protein | - |
| G3U99_RS14105 | 2936101..2936760 | - | 660 | WP_021458349.1 | hypothetical protein | - |
| G3U99_RS14110 | 2936966..2937316 | - | 351 | WP_021458348.1 | cell envelope integrity protein TolA | - |
| G3U99_RS14115 | 2937480..2937854 | - | 375 | WP_021458347.1 | hypothetical protein | - |
| G3U99_RS14120 | 2937883..2937993 | - | 111 | WP_200905126.1 | DUF3265 domain-containing protein | - |
| G3U99_RS14125 | 2937998..2938225 | - | 228 | WP_031343357.1 | hypothetical protein | - |
| G3U99_RS14130 | 2938464..2938556 | - | 93 | WP_207623562.1 | DUF3265 domain-containing protein | - |
| G3U99_RS14135 | 2938592..2938894 | - | 303 | WP_021458345.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| G3U99_RS14140 | 2938882..2939139 | - | 258 | WP_021458344.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| G3U99_RS14145 | 2939329..2939682 | - | 354 | WP_019277228.1 | glyoxalase/bleomycin resistance/dioxygenase family protein | - |
| G3U99_RS14150 | 2939829..2940086 | - | 258 | WP_021458343.1 | hypothetical protein | - |
| G3U99_RS14155 | 2941022..2941115 | - | 94 | Protein_2683 | DUF3265 domain-containing protein | - |
| G3U99_RS14160 | 2941252..2941476 | + | 225 | WP_021458340.1 | DUF3892 domain-containing protein | - |
| G3U99_RS14165 | 2941661..2942143 | - | 483 | WP_021458339.1 | tetratricopeptide repeat protein | - |
| G3U99_RS14170 | 2942250..2943026 | - | 777 | WP_021458338.1 | hypothetical protein | - |
| G3U99_RS14175 | 2943180..2943617 | - | 438 | WP_021458337.1 | GIY-YIG nuclease family protein | - |
| G3U99_RS14180 | 2943643..2943740 | - | 98 | Protein_2688 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2903134..2946051 | 42917 | |
| - | inside | Integron | - | - | 2907216..2944750 | 37534 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11568.46 Da Isoelectric Point: 5.1879
>T149895 WP_021458345.1 NZ_CP048693:c2938894-2938592 [Vibrio coralliilyticus OCN008]
MAEIIWTEPALSDLNDIAEYIALENVVAAKQLVQTIFSKVERLEAFPESGRIPPELEHLSYREVVVNPCRVFYKQGGDKV
FILFVMRAERDLRKFLLSKQ
MAEIIWTEPALSDLNDIAEYIALENVVAAKQLVQTIFSKVERLEAFPESGRIPPELEHLSYREVVVNPCRVFYKQGGDKV
FILFVMRAERDLRKFLLSKQ
Download Length: 303 bp
>T149895 NZ_CP064330:1388401-1388697 [Xylella fastidiosa subsp. fastidiosa]
ATGGTCGAACTCATCAAAACCAGCACTTTTGATGCTTGGATAAACAGCTTACGTGACCGCAAAGCAGCCGCCAGAATTCA
AGCGCGTCTTGATCGGCTCGCACTTGGCAATCCCGGCGACGTGAAGCCTGTGGGTGCTGGCATCTCAGAAATGAGGATCG
ACCATGGGCCCGGATATCGGATCTATTTTATGAAGCATGGTGCAGTACTGATTCTCTTACTTTGCGGTGGCGATAAATCG
TCACAAGTACGAGATATAGAGCAGGCTAAGGCACTGGCTGCACTGTGGAAGGATTAG
ATGGTCGAACTCATCAAAACCAGCACTTTTGATGCTTGGATAAACAGCTTACGTGACCGCAAAGCAGCCGCCAGAATTCA
AGCGCGTCTTGATCGGCTCGCACTTGGCAATCCCGGCGACGTGAAGCCTGTGGGTGCTGGCATCTCAGAAATGAGGATCG
ACCATGGGCCCGGATATCGGATCTATTTTATGAAGCATGGTGCAGTACTGATTCTCTTACTTTGCGGTGGCGATAAATCG
TCACAAGTACGAGATATAGAGCAGGCTAAGGCACTGGCTGCACTGTGGAAGGATTAG
Antitoxin
Download Length: 86 a.a. Molecular weight: 9634.15 Da Isoelectric Point: 6.7269
>AT149895 WP_021458344.1 NZ_CP048693:c2939139-2938882 [Vibrio coralliilyticus OCN008]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALVDGKVVSHDEAKDKM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALVDGKVVSHDEAKDKM
SKWLK
Download Length: 258 bp
>AT149895 NZ_CP064330:1388701-1389006 [Xylella fastidiosa subsp. fastidiosa]
ATGAATAATGAGACTTTTAGTCGATACGACACCGCTGACTATCTCAAAACCGAAGAAGATATTGCGGCTTATATGGAAGC
CGTCATGGAAGAAGGTGGTAGGGATAATCCTGCTTTTATTGCACGGGCACTTGGTGCTGTCGCTCGTGCTCGTAATTTAA
GTCAGCTTGCTCGTGACGTTGGCATGTCCAGGCAAGGACTAGACAAGGCACTCTCTAACGACGGCAACCCAAGCTTCTCA
ACCATCTTAAAAGTGGCTAAAGCGCTTGGTTTACGGATGTCATTCACACCTTCCTCTATGAGTTAA
ATGAATAATGAGACTTTTAGTCGATACGACACCGCTGACTATCTCAAAACCGAAGAAGATATTGCGGCTTATATGGAAGC
CGTCATGGAAGAAGGTGGTAGGGATAATCCTGCTTTTATTGCACGGGCACTTGGTGCTGTCGCTCGTGCTCGTAATTTAA
GTCAGCTTGCTCGTGACGTTGGCATGTCCAGGCAAGGACTAGACAAGGCACTCTCTAACGACGGCAACCCAAGCTTCTCA
ACCATCTTAAAAGTGGCTAAAGCGCTTGGTTTACGGATGTCATTCACACCTTCCTCTATGAGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|