Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/-
Location 2791493..2792117 Replicon chromosome
Accession NZ_CP048670
Organism Acinetobacter sp. YH12138 strain YH12138_T

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag G0029_RS13510 Protein ID WP_111885419.1
Coordinates 2791493..2791879 (-) Length 129 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag G0029_RS13515 Protein ID WP_171262590.1
Coordinates 2791872..2792117 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G0029_RS13495 2786884..2789085 - 2202 WP_180106927.1 TRAP transporter large permease subunit -
G0029_RS13500 2789277..2789849 - 573 WP_078192449.1 rhombosortase -
G0029_RS13505 2789891..2790973 - 1083 WP_180106925.1 hypothetical protein -
G0029_RS13510 2791493..2791879 - 387 WP_111885419.1 hypothetical protein Toxin
G0029_RS13515 2791872..2792117 - 246 WP_171262590.1 succinate dehydrogenase assembly factor 2 Antitoxin
G0029_RS13520 2792311..2793483 + 1173 WP_180106923.1 acyl-CoA dehydrogenase family protein -
G0029_RS13525 2793528..2794211 - 684 Protein_2611 alpha/beta hydrolase -
G0029_RS13530 2794460..2795950 - 1491 WP_180106921.1 NAD(P)/FAD-dependent oxidoreductase -
G0029_RS13535 2796167..2796532 - 366 WP_005012953.1 50S ribosomal protein L17 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Flavinator of succinate dehydrogenase

(6-78)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 15485.64 Da        Isoelectric Point: 10.9047

>T149872 WP_111885419.1 NZ_CP048670:c2791879-2791493 [Acinetobacter sp. YH12138]
MDNRQFKLKRSFLSHAFQFFIFAVLMTLLYQLLTPMLWGIFFLIGLVVYVLFFRKHLHVTSLEYLDGTDWSLQRLNRPVQ
RVQISHILDHQMYIVVYFMHARAKPVIIWRDQLSLKQWKSLKVLAKMI

Download         Length: 387 bp

>T149872 NZ_CP064326:c474045-473791 [Xylella fastidiosa subsp. multiplex]
ATGAAGCGTAAGCACGCTAAAACTCTCAGCGCTATATACACACGCCCTGTTTCGGCCAACATTCAATGGCGCGATATTGA
AGCGCTGTTCGTGGAGCTTGGAGCGAAAGTAGAAGAACGTGAAGGTTCTCGTATGTTGGTGCGGCTGTTCGGTGAACGTC
GGATATTCCACCGGCCCCACCCTTCGCCTAACACTGACAAGGGTGCTGTTGAATCAATCCGAGCTTGGTTGAAATCGAAC
GGAGTTACACCATGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9650.05 Da        Isoelectric Point: 4.8668

>AT149872 WP_171262590.1 NZ_CP048670:c2792117-2791872 [Acinetobacter sp. YH12138]
ISLEERKVIYRARRGLKEIDVYFDPYVKNYYLQADAAEKDMFAELVAAEDPDLLDWFMEVSEPPRPELKTFIQKLKHYVH
G

Download         Length: 246 bp

>AT149872 NZ_CP064326:c473794-473459 [Xylella fastidiosa subsp. multiplex]
ATGAAGAACATCATGACTATTGAGAGCTTTAAAGCCATCATTACCTATGATCCGGAGATCGACATGTTTCGCGGTGAATT
TGTGGGTATCAATGGTGGTGCTGATTTCTATGCAAAAGACCTTAAGGGTCTTCGTCGAGAAGGAGCTATTTCTCTGAAGG
TATTTTTGGAAGCCTGCAAAGAAGACAGCGTGGAACCACGTAAATGCTACTCAGGGAAGTTCAATGCAAGGATTTCTCCT
GAACTGCATGCTTTGGCTTCTGAAGCCGCAGCAGCACAGGGCATCAGTTTGAACCAATTTGTAGAACAAGCGATTCAGCA
TGAAGTCCACACCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References