Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2963433..2963576 | Replicon | chromosome |
| Accession | NZ_CP048650 | ||
| Organism | Enterobacter roggenkampii strain Ecl_20_981 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2963438..2963541 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2963433..2963576 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3T53_RS14185 | 2959700..2961142 | + | 1443 | WP_044596624.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G3T53_RS14190 | 2961248..2961487 | + | 240 | WP_008500472.1 | YebV family protein | - |
| G3T53_RS14195 | 2961522..2962166 | - | 645 | WP_044596625.1 | protein-serine/threonine phosphatase | - |
| G3T53_RS14200 | 2962333..2963274 | + | 942 | WP_021240429.1 | VirK/YbjX family protein | - |
| - | 2963433..2963576 | + | 144 | - | - | Antitoxin |
| - | 2963438..2963541 | - | 104 | - | - | Toxin |
| G3T53_RS14205 | 2963680..2964018 | - | 339 | WP_008500468.1 | YebY family protein | - |
| G3T53_RS14210 | 2964035..2964904 | - | 870 | WP_044596626.1 | copper homeostasis membrane protein CopD | - |
| G3T53_RS14215 | 2964906..2965277 | - | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| G3T53_RS14220 | 2965415..2965645 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| G3T53_RS14225 | 2965756..2966406 | + | 651 | WP_044596627.1 | carbon-nitrogen hydrolase family protein | - |
| G3T53_RS14230 | 2966431..2967093 | + | 663 | WP_044596628.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149843 NZ_CP048650:c2963541-2963438 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT149843 NZ_CP048650:2963433-2963576 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
