Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 285160..285431 | Replicon | chromosome |
| Accession | NZ_CP048605 | ||
| Organism | Escherichia coli strain PapRG-06-5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 285290..285393 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 285160..285431 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M73_RS01400 | 281715..282377 | - | 663 | WP_163424947.1 | exodeoxyribonuclease X | - |
| G3M73_RS01405 | 282401..283057 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| G3M73_RS01410 | 283159..283389 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G3M73_RS01415 | 283528..283902 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G3M73_RS01420 | 283906..284778 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| G3M73_RS01425 | 284791..285132 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 285160..285431 | - | 272 | - | - | Antitoxin |
| - | 285290..285393 | + | 104 | - | - | Toxin |
| G3M73_RS01430 | 285528..286184 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| G3M73_RS01435 | 286185..286376 | - | 192 | WP_001313035.1 | YebW family protein | - |
| G3M73_RS01440 | 286481..286717 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G3M73_RS01445 | 286835..288274 | - | 1440 | WP_024227172.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149703 NZ_CP048605:285290-285393 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT149703 NZ_CP048605:c285431-285160 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
