Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064717..2064985 | Replicon | chromosome |
| Accession | NZ_CP048603 | ||
| Organism | Escherichia coli strain ChlosBP-23-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064845..2064947 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064717..2064985 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M71_RS09745 | 2061269..2061931 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G3M71_RS09750 | 2061955..2062611 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| G3M71_RS09755 | 2062714..2062944 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G3M71_RS09760 | 2063083..2063457 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G3M71_RS09765 | 2063461..2064333 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| G3M71_RS09770 | 2064346..2064687 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2064717..2064985 | - | 269 | - | - | Antitoxin |
| - | 2064845..2064947 | + | 103 | - | - | Toxin |
| G3M71_RS09775 | 2065082..2065738 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| G3M71_RS09780 | 2065739..2065930 | - | 192 | WP_001317886.1 | YebW family protein | - |
| G3M71_RS09785 | 2066035..2066271 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G3M71_RS09790 | 2066389..2067828 | - | 1440 | WP_012601553.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T149661 NZ_CP048603:2064845-2064947 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT149661 NZ_CP048603:c2064985-2064717 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
