Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 5059461..5059607 Replicon chromosome
Accession NZ_CP048598
Organism Klebsiella aerogenes strain AUH-KAM-9

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 5059469..5059572 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 5059461..5059607 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
F8267_RS23920 5054763..5055281 + 519 WP_015366014.1 spore coat U domain-containing protein -
F8267_RS23925 5055299..5056048 + 750 WP_015366013.1 molecular chaperone -
F8267_RS23930 5056051..5058375 + 2325 WP_032705949.1 fimbrial biogenesis outer membrane usher protein -
F8267_RS23935 5058394..5059341 + 948 WP_032706245.1 spore coat U domain-containing protein -
- 5059461..5059607 + 147 - - Antitoxin
- 5059469..5059572 - 104 - - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T149642 NZ_CP048598:c5059572-5059469 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 147 bp

>AT149642 NZ_CP048598:5059461-5059607 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References