Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 504516..505110 Replicon chromosome
Accession NZ_CP048528
Organism Agrobacterium tumefaciens strain Sta003

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag FY142_RS02440 Protein ID WP_080865974.1
Coordinates 504796..505110 (-) Length 105 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FY142_RS02435 Protein ID WP_080865973.1
Coordinates 504516..504815 (-) Length 100 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FY142_RS02410 (FY142_02405) 499704..500702 + 999 WP_060723902.1 asparaginase -
FY142_RS02415 (FY142_02410) 500837..501457 + 621 WP_003508980.1 glutathione S-transferase family protein -
FY142_RS02420 (FY142_02415) 501551..502210 - 660 WP_003508979.1 glutathione S-transferase family protein -
FY142_RS02425 (FY142_02420) 502293..502808 - 516 WP_099085580.1 MarR family transcriptional regulator -
FY142_RS02430 (FY142_02425) 502950..504479 + 1530 WP_060723904.1 MDR family MFS transporter -
FY142_RS02435 (FY142_02430) 504516..504815 - 300 WP_080865973.1 putative addiction module antidote protein Antitoxin
FY142_RS02440 (FY142_02435) 504796..505110 - 315 WP_080865974.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FY142_RS02445 (FY142_02440) 505341..506357 + 1017 WP_163117905.1 ligase-associated DNA damage response exonuclease -
FY142_RS02450 (FY142_02445) 506359..507984 + 1626 WP_099085579.1 cisplatin damage response ATP-dependent DNA ligase -
FY142_RS02455 (FY142_02450) 508159..509124 + 966 WP_020813204.1 alpha/beta fold hydrolase -
FY142_RS02460 (FY142_02455) 509163..509945 - 783 WP_003508963.1 glycosyltransferase family 32 protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-95)

Antitoxin

Uncharacterized protein HI1420

(6-97)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 11772.48 Da        Isoelectric Point: 10.3857

>T149592 WP_080865974.1 NZ_CP048528:c505110-504796 [Agrobacterium tumefaciens]
MNSFQKSAEFDEWLKVLKDRAGKVRILHRLTAAEHGNFGDCAPVGEGVSEMRIHFGPGYRVYFTRVGKRVYFLLVGGDKS
SQRRDIKRAIEMAQTIGRDGRDGI

Download         Length: 315 bp

>T149592 NZ_CP064169:c78660-78355 [Escherichia coli O157:H7]
ATGCAGTTTAAGGTTTACACCTATAAAAGAGAGAGCCGTTATCGTCTGTTTGTGGATGTACAGAGTGATATTATTGACAC
GCCCGGGCGACGGATGGTGATCCCCCTGGCCAGTGCACGTCTGCTGTCAGATAAAGTCTCCCGTGAACTTTACCCGGTGG
TGCATATCGGGGATGAAAGCTGGCGCATGATGACCACCGATATGGCCAGTGTGCCGGTCTCCGTTATCGGGGAAGAAGTG
GCTGATCTCAGCCACCGCGAAAATGACATCAAAAACGCCATTAACCTGATGTTCTGGGGAATATAA

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 10765.29 Da        Isoelectric Point: 4.8307

>AT149592 WP_080865973.1 NZ_CP048528:c504815-504516 [Agrobacterium tumefaciens]
MAVTEFSKFDVSDYLDSDEAMIEFLAIAMEDENPDVFIGALGAVAKARGMSHIADASGLGRESLYKALRPGSKLRYETVQ
RVLHALGFRLAVEKSLNAA

Download         Length: 300 bp

>AT149592 NZ_CP064169:c78880-78662 [Escherichia coli O157:H7]
ATGAAGCAGCGTATTACAGTGACAGTTGACAGCGACAGCTATCAGTTGCTCAAGGCATATGATGTCAATATCTCCGGTCT
GGTAAGCACAACCATGCAGAATGAAGCCCGTCGTCTGCGTGCCGAACGCTGGAAAGCGGAAAATCAGGAAGGGATGGCTG
AGGTCGCCCGGTTTATTGAAATGAACGGCTCTTTTGCTGACGAGAACAGGGACTGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References