Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 650218..651508 Replicon chromosome
Accession NZ_CP048458
Organism Burkholderia multivorans strain P1Bm2011a

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag G0D87_RS18465 Protein ID WP_206381764.1
Coordinates 650218..650829 (-) Length 204 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag G0D87_RS18470 Protein ID WP_206381765.1
Coordinates 650951..651508 (-) Length 186 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G0D87_RS18445 645545..646336 + 792 WP_206381925.1 enoyl-CoA hydratase -
G0D87_RS18450 646333..647472 + 1140 WP_206381762.1 enoyl-CoA hydratase/isomerase family protein -
G0D87_RS18455 647519..648439 - 921 WP_006406123.1 LysR family transcriptional regulator -
G0D87_RS18460 648618..650156 + 1539 WP_206381763.1 MFS transporter -
G0D87_RS18465 650218..650829 - 612 WP_206381764.1 HD domain-containing protein Toxin
G0D87_RS18470 650951..651508 - 558 WP_206381765.1 helix-turn-helix domain-containing protein Antitoxin
G0D87_RS18475 652019..653422 + 1404 WP_006396486.1 hypothetical protein -
G0D87_RS18480 653763..654494 + 732 WP_012216547.1 ribonuclease T2 -
G0D87_RS18485 654665..655303 - 639 WP_111310988.1 cysteine hydrolase -
G0D87_RS18490 655432..655968 - 537 Protein_552 helix-turn-helix transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

5'-deoxynucleotidase YfbR/HDDC2

(6-190)

Antitoxin

Cro/C1-type helix-turn-helix domain

(15-51)


Sequences

Toxin        


Download         Length: 204 a.a.        Molecular weight: 22601.32 Da        Isoelectric Point: 5.3228

>T149535 WP_206381764.1 NZ_CP048458:c650829-650218 [Burkholderia multivorans]
MNPDTIRARLDFLREAERLKDVLRSGRTSSGRRESTAEHSWRLCLMALAFADALPGIDTLKLLELCVVHDLGEALHGDIP
ATEQAAHPDKNMHERDDLLTLTAALDPVLRNELVALWDEYDAAASPEARAAKALDKLETILQHTQGANPPDFDYAFNLGY
GRRYTDAAPLFSAIRAIVDADTQRRIEAQAQTSSQTQTRTHRT

Download         Length: 612 bp

>T149535 NZ_CP064126:937197-937493 [Yersinia pestis]
ATGGAGAAACGGACTCCGCATACTCGTTTATTAAAAGTAAAAGAATTGGTATTGAAGGGGAATATTAAAACGACACGAAC
TGCCAGAGATGGGGCTGAGGAACTGGGACTGAGTTTTAGAGATATGTGTGATGCAGTTTCCGAACTGATTAGCGCCGATT
TTTATAAAAGTATGACGACACATCAAGATCATACCATTTGGCAGGATGTTTACCGTCCTATGCTTTCTTGCGGTAGAGTT
TATTTGAAAATCACGGTTATCGATGATGTTTTGAATGTCTCGTTTAAGGAGATTTAA

Antitoxin


Download         Length: 186 a.a.        Molecular weight: 20363.37 Da        Isoelectric Point: 8.5490

>AT149535 WP_206381765.1 NZ_CP048458:c651508-650951 [Burkholderia multivorans]
MPDSPLHTPPLGPQLKRWRLLHRIKQSHAAALFGVAQSTISRWEAGVQQMSPDERATAERLLAARLDSAGDHALARLVAG
SAGRMHLVCDLTHRLLACSPSRAAEFSQPLPMLLGTSLWRYATEEIVRMETALDTLGWHDCAGPPSVEFDTGTNASRVVP
IHRSRCRWTRIMLSDGSAARLVETL

Download         Length: 558 bp

>AT149535 NZ_CP064126:937493-937891 [Yersinia pestis]
ATGATGAAATGTCCAGTTTGTGGCGGTGTAGAATTAATCCACGAAGCGCGTGACGTTCCCTTTACCTATAAAGGGCGTAA
GTTCATCGTCGAAGGCGTGATAGGGCAACATTGCCCGGCATGCGGTGAAACAGTCATGACCGAAGCCGAGTCCGATGTCT
ATGCAGCAAAAACAATGCTTTTGCGAAAAATGGTCAATACAGAATCGATTGCCCCCGCATATATTGTGCAGATCCGAAAA
AAGTTGGGCCTAAACCAGCGGGAAGCCAGTGAGATTTTTGGTGGTGGGGTTAATGCATTTTCGCGTTACGAAAAAGGTAA
GGCTTTGCCACATCCATCAACGATAAAACTGTTGCAAGTGCTTGATAAACACCCGGAGTTATTGAATGAAATTAGGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References