Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 1233009..1233543 Replicon chromosome
Accession NZ_CP048455
Organism Burkholderia multivorans strain P1Bm2011b

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag G0D88_RS20820 Protein ID WP_155825023.1
Coordinates 1233009..1233308 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID J4RB90
Locus tag G0D88_RS20825 Protein ID WP_006413656.1
Coordinates 1233298..1233543 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G0D88_RS20805 1229358..1230665 + 1308 WP_039218025.1 shikimate transporter -
G0D88_RS20810 1230700..1231428 - 729 WP_155825024.1 HNH endonuclease -
G0D88_RS20815 1231599..1232900 + 1302 WP_006403538.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
G0D88_RS20820 1233009..1233308 - 300 WP_155825023.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
G0D88_RS20825 1233298..1233543 - 246 WP_006413656.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
G0D88_RS20830 1233683..1234453 + 771 WP_006403543.1 helix-turn-helix domain-containing protein -
G0D88_RS20835 1234484..1236784 - 2301 WP_155825022.1 ATP-dependent DNA helicase -
G0D88_RS20840 1236781..1238484 - 1704 WP_206382439.1 VRR-NUC domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(8-94)

Antitoxin

Antitoxin ParD

(1-80)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11542.04 Da        Isoelectric Point: 7.3154

>T149531 WP_155825023.1 NZ_CP048455:c1233308-1233009 [Burkholderia multivorans]
MPVKARTVRLTPLAEADLEAIWAYTYERWSLDQAERYIGELSAAFERLARRESVGWPSRAGGNYSRYLVGSHVAFYRETT
ETLDVIRVLHQRMDVDRHL

Download         Length: 300 bp

>T149531 NZ_CP064125:c2867847-2867754 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8632.71 Da        Isoelectric Point: 6.4604

>AT149531 WP_006413656.1 NZ_CP048455:c1233543-1233298 [Burkholderia multivorans]
MARNTSISLGDHLAEFVDMQVASGRYGSASDVVRAGLRLLETQETELRALQEALKAGEASGTPAPFDSQAFLARMRAKHA
G

Download         Length: 246 bp

>AT149531 NZ_CP064125:2867753-2867847 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3KUX0

References