Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 1233135..1233669 Replicon chromosome
Accession NZ_CP048449
Organism Burkholderia multivorans strain P1Bm2014

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag G0D90_RS20835 Protein ID WP_155825023.1
Coordinates 1233135..1233434 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID J4RB90
Locus tag G0D90_RS20840 Protein ID WP_006413656.1
Coordinates 1233424..1233669 (-) Length 82 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G0D90_RS20820 1229484..1230791 + 1308 WP_039218025.1 shikimate transporter -
G0D90_RS20825 1230826..1231554 - 729 WP_155825024.1 HNH endonuclease -
G0D90_RS20830 1231725..1233026 + 1302 WP_006403538.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
G0D90_RS20835 1233135..1233434 - 300 WP_155825023.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
G0D90_RS20840 1233424..1233669 - 246 WP_006413656.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
G0D90_RS20845 1233809..1234579 + 771 WP_006403543.1 helix-turn-helix domain-containing protein -
G0D90_RS20850 1234610..1236910 - 2301 WP_155825022.1 ATP-dependent DNA helicase -
G0D90_RS20855 1236907..1238610 - 1704 WP_206382439.1 VRR-NUC domain-containing protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(8-94)

Antitoxin

(1-80)


Sequences


Toxin        


Download         Length: 100 a.a.        Molecular weight: 11542.04 Da        Isoelectric Point: 7.3154

>T149515 WP_155825023.1 NZ_CP048449:c1233434-1233135 [Burkholderia multivorans]
MPVKARTVRLTPLAEADLEAIWAYTYERWSLDQAERYIGELSAAFERLARRESVGWPSRAGGNYSRYLVGSHVAFYRETT
ETLDVIRVLHQRMDVDRHL

Download         Length: 300 bp

>T149515 NZ_CP064122:3395683-3395886 [Yersinia pestis]
ATGACAAAAACTGACTACCTGATGCGTTTAAGAAAATGTACGACTATCGATACGCTAGAACGTGTAATTGAAAAAAATAA
GTACGAACTTTCTGATGATGAACTGGAATTGTTTTACTCAGCTGCAGACCATCGCCTGGCTGAACTAACGATGAATAAGC
TTTATGATAAAATTCCACCTACTGTATGGCAACATGTGAAATAG

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8632.71 Da        Isoelectric Point: 6.4604

>AT149515 WP_006413656.1 NZ_CP048449:c1233669-1233424 [Burkholderia multivorans]
MARNTSISLGDHLAEFVDMQVASGRYGSASDVVRAGLRLLETQETELRALQEALKAGEASGTPAPFDSQAFLARMRAKHA
G

Download         Length: 246 bp

>AT149515 NZ_CP064122:3395266-3395634 [Yersinia pestis]
ATGGATGAGTACTCGCCTAAGCGGCATGACATTGCCCAACTGAAGTTTCTATGTGAAAGCTTGTATGATGAAGGTATTGC
AACTCTTGGCGACAGCCATCATGGCTGGATAAATGACCCAACGTCGGCCATAAACCTTCAACTCAATGATTTGATCGAGC
ATATAGCTTCATTTGTGATGAGTTTTAAAATAAAATACCCGGATGGAAGCCAGCTTTCCGAGTTAGTGGAAGAATATTTA
GACGACACATATACTCTGTTTAGTAGTTATGGAATCAATGATCCTGAATTGCGTCGCTGGCAGAAAACCAAAGAGCATTT
ATTCAGACTTTTCTCAGGGGAATACGTATGTACCCTGATGAAAACTTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A0H3KUX0

References