Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
Location | 1233135..1233669 | Replicon | chromosome |
Accession | NZ_CP048449 | ||
Organism | Burkholderia multivorans strain P1Bm2014 |
Toxin (Protein)
Gene name | parE | Uniprot ID | - |
Locus tag | G0D90_RS20835 | Protein ID | WP_155825023.1 |
Coordinates | 1233135..1233434 (-) | Length | 100 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | J4RB90 |
Locus tag | G0D90_RS20840 | Protein ID | WP_006413656.1 |
Coordinates | 1233424..1233669 (-) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
G0D90_RS20820 | 1229484..1230791 | + | 1308 | WP_039218025.1 | shikimate transporter | - |
G0D90_RS20825 | 1230826..1231554 | - | 729 | WP_155825024.1 | HNH endonuclease | - |
G0D90_RS20830 | 1231725..1233026 | + | 1302 | WP_006403538.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
G0D90_RS20835 | 1233135..1233434 | - | 300 | WP_155825023.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
G0D90_RS20840 | 1233424..1233669 | - | 246 | WP_006413656.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
G0D90_RS20845 | 1233809..1234579 | + | 771 | WP_006403543.1 | helix-turn-helix domain-containing protein | - |
G0D90_RS20850 | 1234610..1236910 | - | 2301 | WP_155825022.1 | ATP-dependent DNA helicase | - |
G0D90_RS20855 | 1236907..1238610 | - | 1704 | WP_206382439.1 | VRR-NUC domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11542.04 Da Isoelectric Point: 7.3154
>T149515 WP_155825023.1 NZ_CP048449:c1233434-1233135 [Burkholderia multivorans]
MPVKARTVRLTPLAEADLEAIWAYTYERWSLDQAERYIGELSAAFERLARRESVGWPSRAGGNYSRYLVGSHVAFYRETT
ETLDVIRVLHQRMDVDRHL
MPVKARTVRLTPLAEADLEAIWAYTYERWSLDQAERYIGELSAAFERLARRESVGWPSRAGGNYSRYLVGSHVAFYRETT
ETLDVIRVLHQRMDVDRHL
Download Length: 300 bp
>T149515 NZ_CP064122:3395683-3395886 [Yersinia pestis]
ATGACAAAAACTGACTACCTGATGCGTTTAAGAAAATGTACGACTATCGATACGCTAGAACGTGTAATTGAAAAAAATAA
GTACGAACTTTCTGATGATGAACTGGAATTGTTTTACTCAGCTGCAGACCATCGCCTGGCTGAACTAACGATGAATAAGC
TTTATGATAAAATTCCACCTACTGTATGGCAACATGTGAAATAG
ATGACAAAAACTGACTACCTGATGCGTTTAAGAAAATGTACGACTATCGATACGCTAGAACGTGTAATTGAAAAAAATAA
GTACGAACTTTCTGATGATGAACTGGAATTGTTTTACTCAGCTGCAGACCATCGCCTGGCTGAACTAACGATGAATAAGC
TTTATGATAAAATTCCACCTACTGTATGGCAACATGTGAAATAG
Antitoxin
Download Length: 82 a.a. Molecular weight: 8632.71 Da Isoelectric Point: 6.4604
>AT149515 WP_006413656.1 NZ_CP048449:c1233669-1233424 [Burkholderia multivorans]
MARNTSISLGDHLAEFVDMQVASGRYGSASDVVRAGLRLLETQETELRALQEALKAGEASGTPAPFDSQAFLARMRAKHA
G
MARNTSISLGDHLAEFVDMQVASGRYGSASDVVRAGLRLLETQETELRALQEALKAGEASGTPAPFDSQAFLARMRAKHA
G
Download Length: 246 bp
>AT149515 NZ_CP064122:3395266-3395634 [Yersinia pestis]
ATGGATGAGTACTCGCCTAAGCGGCATGACATTGCCCAACTGAAGTTTCTATGTGAAAGCTTGTATGATGAAGGTATTGC
AACTCTTGGCGACAGCCATCATGGCTGGATAAATGACCCAACGTCGGCCATAAACCTTCAACTCAATGATTTGATCGAGC
ATATAGCTTCATTTGTGATGAGTTTTAAAATAAAATACCCGGATGGAAGCCAGCTTTCCGAGTTAGTGGAAGAATATTTA
GACGACACATATACTCTGTTTAGTAGTTATGGAATCAATGATCCTGAATTGCGTCGCTGGCAGAAAACCAAAGAGCATTT
ATTCAGACTTTTCTCAGGGGAATACGTATGTACCCTGATGAAAACTTAA
ATGGATGAGTACTCGCCTAAGCGGCATGACATTGCCCAACTGAAGTTTCTATGTGAAAGCTTGTATGATGAAGGTATTGC
AACTCTTGGCGACAGCCATCATGGCTGGATAAATGACCCAACGTCGGCCATAAACCTTCAACTCAATGATTTGATCGAGC
ATATAGCTTCATTTGTGATGAGTTTTAAAATAAAATACCCGGATGGAAGCCAGCTTTCCGAGTTAGTGGAAGAATATTTA
GACGACACATATACTCTGTTTAGTAGTTATGGAATCAATGATCCTGAATTGCGTCGCTGGCAGAAAACCAAAGAGCATTT
ATTCAGACTTTTCTCAGGGGAATACGTATGTACCCTGATGAAAACTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|