Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1927370..1927641 | Replicon | chromosome |
| Accession | NZ_CP048439 | ||
| Organism | Escherichia coli strain NBRC 3301 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1927500..1927603 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1927370..1927641 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GXM24_RS09190 | 1923925..1924587 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GXM24_RS09195 | 1924611..1925267 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GXM24_RS09200 | 1925369..1925599 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GXM24_RS09205 | 1925738..1926112 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GXM24_RS09210 | 1926116..1926988 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| GXM24_RS09215 | 1927001..1927342 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1927370..1927641 | - | 272 | - | - | Antitoxin |
| - | 1927500..1927603 | + | 104 | - | - | Toxin |
| GXM24_RS09220 | 1927738..1928394 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GXM24_RS09225 | 1928395..1928586 | - | 192 | WP_000457842.1 | YebW family protein | - |
| GXM24_RS09230 | 1928691..1928927 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GXM24_RS09235 | 1929045..1930484 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149464 NZ_CP048439:1927500-1927603 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT149464 NZ_CP048439:c1927641-1927370 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
