Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2844354..2844499 | Replicon | chromosome |
| Accession | NZ_CP048430 | ||
| Organism | Klebsiella pneumoniae strain KP18-3-8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2844361..2844463 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2844354..2844499 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZ213_RS14550 | 2839886..2841319 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GZ213_RS14555 | 2841435..2841674 | + | 240 | WP_002911393.1 | YebV family protein | - |
| GZ213_RS14560 | 2841772..2841963 | + | 192 | WP_002911395.1 | YebW family protein | - |
| GZ213_RS14565 | 2841960..2842613 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| GZ213_RS14570 | 2842770..2843738 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| GZ213_RS14575 | 2843843..2843986 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2844354..2844499 | + | 146 | - | - | Antitoxin |
| - | 2844361..2844463 | - | 103 | - | - | Toxin |
| GZ213_RS14580 | 2844622..2844960 | - | 339 | WP_002911404.1 | YebY family protein | - |
| GZ213_RS14585 | 2844977..2845846 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| GZ213_RS14590 | 2845850..2846224 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GZ213_RS14595 | 2846337..2846567 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GZ213_RS14600 | 2846646..2847305 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GZ213_RS14605 | 2847309..2849369 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T149421 NZ_CP048430:c2844463-2844361 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT149421 NZ_CP048430:2844354-2844499 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
