Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2081282..2081425 | Replicon | chromosome |
| Accession | NZ_CP048416 | ||
| Organism | Citrobacter freundii strain CitB | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2081317..2081420 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2081282..2081425 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZ999_RS09770 | 2077729..2078391 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| GZ999_RS09775 | 2078415..2079071 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| GZ999_RS09780 | 2079178..2079408 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| GZ999_RS09785 | 2079552..2079926 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| GZ999_RS09790 | 2079930..2080802 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| GZ999_RS09795 | 2080823..2081161 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2081282..2081425 | - | 144 | - | - | Antitoxin |
| - | 2081317..2081420 | + | 104 | - | - | Toxin |
| GZ999_RS09800 | 2081574..2082215 | + | 642 | WP_048217477.1 | protein-serine/threonine phosphatase | - |
| GZ999_RS09805 | 2082216..2082407 | - | 192 | WP_003034941.1 | YebW family protein | - |
| GZ999_RS09810 | 2082510..2082746 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| GZ999_RS09815 | 2082847..2084268 | - | 1422 | WP_075261972.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149399 NZ_CP048416:2081317-2081420 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT149399 NZ_CP048416:c2081425-2081282 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
