Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1968002..1968145 | Replicon | chromosome |
| Accession | NZ_CP048388 | ||
| Organism | Citrobacter portucalensis strain PNUCL1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1968037..1968140 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1968002..1968145 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZH81_RS09215 | 1964449..1965111 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| GZH81_RS09220 | 1965135..1965791 | - | 657 | WP_008785043.1 | carbon-nitrogen hydrolase family protein | - |
| GZH81_RS09225 | 1965898..1966128 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| GZH81_RS09230 | 1966272..1966646 | + | 375 | WP_212025416.1 | CopC domain-containing protein YobA | - |
| GZH81_RS09235 | 1966650..1967522 | + | 873 | WP_195994732.1 | copper homeostasis membrane protein CopD | - |
| GZH81_RS09240 | 1967543..1967881 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 1968002..1968145 | - | 144 | - | - | Antitoxin |
| - | 1968037..1968140 | + | 104 | - | - | Toxin |
| GZH81_RS09245 | 1968294..1968935 | + | 642 | WP_048224177.1 | protein-serine/threonine phosphatase | - |
| GZH81_RS09250 | 1968936..1969127 | - | 192 | WP_003034941.1 | YebW family protein | - |
| GZH81_RS09255 | 1969230..1969466 | - | 237 | WP_165612495.1 | YebV family protein | - |
| GZH81_RS09260 | 1969567..1970955 | - | 1389 | WP_032944459.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149328 NZ_CP048388:1968037-1968140 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT149328 NZ_CP048388:c1968145-1968002 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
