Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1997486..1997757 | Replicon | chromosome |
| Accession | NZ_CP048376 | ||
| Organism | Escherichia coli strain 38 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1997616..1997719 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1997486..1997757 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZS06_RS09495 | 1994041..1994703 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GZS06_RS09500 | 1994727..1995383 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GZS06_RS09505 | 1995485..1995715 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GZS06_RS09510 | 1995854..1996228 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GZS06_RS09515 | 1996232..1997104 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GZS06_RS09520 | 1997117..1997458 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1997486..1997757 | - | 272 | - | - | Antitoxin |
| - | 1997616..1997719 | + | 104 | - | - | Toxin |
| GZS06_RS09525 | 1997854..1998510 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GZS06_RS09530 | 1998511..1998702 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GZS06_RS09535 | 1998807..1999043 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GZS06_RS09540 | 1999161..2000600 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1954573..2013595 | 59022 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149285 NZ_CP048376:1997616-1997719 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT149285 NZ_CP048376:c1997757-1997486 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
