Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2007115..2007386 | Replicon | chromosome |
| Accession | NZ_CP048344 | ||
| Organism | Escherichia coli strain 124 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2007245..2007348 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2007115..2007386 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZS11_RS09580 | 2003670..2004332 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GZS11_RS09585 | 2004356..2005012 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GZS11_RS09590 | 2005114..2005344 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GZS11_RS09595 | 2005483..2005857 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GZS11_RS09600 | 2005861..2006733 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GZS11_RS09605 | 2006746..2007087 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2007115..2007386 | - | 272 | - | - | Antitoxin |
| - | 2007245..2007348 | + | 104 | - | - | Toxin |
| GZS11_RS09610 | 2007483..2008139 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GZS11_RS09615 | 2008140..2008331 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GZS11_RS09620 | 2008436..2008672 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GZS11_RS09625 | 2008790..2010229 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149151 NZ_CP048344:2007245-2007348 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT149151 NZ_CP048344:c2007386-2007115 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
