Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2153610..2153881 | Replicon | chromosome |
| Accession | NZ_CP048337 | ||
| Organism | Escherichia coli strain 142 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2153740..2153843 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2153610..2153881 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZS12_RS10045 | 2150165..2150827 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GZS12_RS10050 | 2150851..2151507 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| GZS12_RS10055 | 2151609..2151839 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GZS12_RS10060 | 2151978..2152352 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| GZS12_RS10065 | 2152356..2153228 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| GZS12_RS10070 | 2153241..2153582 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2153610..2153881 | - | 272 | - | - | Antitoxin |
| - | 2153740..2153843 | + | 104 | - | - | Toxin |
| GZS12_RS10075 | 2153978..2154634 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| GZS12_RS10080 | 2154635..2154826 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GZS12_RS10085 | 2154931..2155167 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GZS12_RS10090 | 2155285..2156724 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T149110 NZ_CP048337:2153740-2153843 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT149110 NZ_CP048337:c2153881-2153610 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
