Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2111347..2111618 | Replicon | chromosome |
| Accession | NZ_CP048310 | ||
| Organism | Escherichia coli strain 32-4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2111477..2111580 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2111347..2111618 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZS16_RS09925 | 2107902..2108564 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GZS16_RS09930 | 2108588..2109244 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GZS16_RS09935 | 2109346..2109576 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GZS16_RS09940 | 2109715..2110089 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GZS16_RS09945 | 2110093..2110965 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| GZS16_RS09950 | 2110978..2111319 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2111347..2111618 | - | 272 | - | - | Antitoxin |
| - | 2111477..2111580 | + | 104 | - | - | Toxin |
| GZS16_RS09955 | 2111715..2112371 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| GZS16_RS09960 | 2112372..2112563 | - | 192 | WP_047149202.1 | YebW family protein | - |
| GZS16_RS09965 | 2112668..2112904 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GZS16_RS09970 | 2113022..2114461 | - | 1440 | WP_024191489.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T148997 NZ_CP048310:2111477-2111580 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT148997 NZ_CP048310:c2111618-2111347 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
