Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2614739..2615007 | Replicon | chromosome |
| Accession | NZ_CP048304 | ||
| Organism | Escherichia coli strain 9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2614867..2614969 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2614739..2615007 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZS17_RS12105 | 2611291..2611953 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GZS17_RS12110 | 2611977..2612633 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| GZS17_RS12115 | 2612736..2612966 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GZS17_RS12120 | 2613105..2613479 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GZS17_RS12125 | 2613483..2614355 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| GZS17_RS12130 | 2614368..2614709 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2614739..2615007 | - | 269 | - | - | Antitoxin |
| - | 2614867..2614969 | + | 103 | - | - | Toxin |
| GZS17_RS12135 | 2615104..2615760 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| GZS17_RS12140 | 2615761..2615952 | - | 192 | WP_001317886.1 | YebW family protein | - |
| GZS17_RS12145 | 2616057..2616293 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GZS17_RS12150 | 2616411..2617850 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T148967 NZ_CP048304:2614867-2614969 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT148967 NZ_CP048304:c2615007-2614739 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
