Detailed information of TA system TA148909

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 1737166..1737263
• Replicon: chromosome
• Accession: NZ_CP048243
• Organism: Ewingella americana strain B6-1

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	1737166..1737255 (+)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	1737166..1737263 (-)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
GXP68_RS08035	1733003..1733956	+	954	WP_185689805.1	prolyl aminopeptidase	-
GXP68_RS08040	1733991..1734221	-	231	WP_034791263.1	DNA polymerase III subunit theta	-
GXP68_RS08045	1734607..1735113	+	507	WP_034791262.1	non-heme ferritin	-
GXP68_RS08050	1735332..1735724	+	393	WP_185690160.1	copper homeostasis periplasmic binding protein CopC	-
GXP68_RS08055	1735721..1736605	+	885	WP_185689806.1	copper homeostasis membrane protein CopD	-
GXP68_RS08060	1736677..1737012	+	336	WP_185689807.1	YebY family protein	-
-	1737166..1737255	+	90	-	-	Toxin
-	1737166..1737263	-	98	-	-	Antitoxin
GXP68_RS08065	1737660..1738358	+	699	WP_185689808.1	extensin family protein	-
GXP68_RS08070	1738368..1739555	-	1188	WP_185689809.1	amidohydrolase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 90 bp

>T148909 NZ_CP048243:1737166-1737255 [Ewingella americana]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT

Antitoxin

Nucleotide

• Length: 98 bp

>AT148909 NZ_CP048243:c1737263-1737166 [Ewingella americana]
AACAGTTAAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGC

Structures

Antitoxin

Antitoxin