Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 760872..761040 | Replicon | chromosome |
| Accession | NZ_CP048108 | ||
| Organism | Klebsiella michiganensis strain BD177 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 760930..761033 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 760872..761040 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GW952_RS03595 | 755999..758059 | + | 2061 | WP_162121255.1 | oligopeptidase B | - |
| GW952_RS03600 | 758066..758725 | - | 660 | WP_162121256.1 | exodeoxyribonuclease X | - |
| GW952_RS03605 | 758804..759034 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| GW952_RS03610 | 759170..759544 | + | 375 | WP_160741056.1 | CopC domain-containing protein YobA | - |
| GW952_RS03615 | 759549..760418 | + | 870 | WP_160741057.1 | copper homeostasis membrane protein CopD | - |
| GW952_RS03620 | 760435..760773 | + | 339 | WP_162121257.1 | YebY family protein | - |
| - | 760872..761040 | - | 169 | - | - | Antitoxin |
| - | 760930..761033 | + | 104 | - | - | Toxin |
| GW952_RS03625 | 761669..761812 | - | 144 | WP_009651986.1 | Ecr family regulatory small membrane protein | - |
| GW952_RS03630 | 761924..762868 | - | 945 | WP_160741058.1 | VirK/YbjX family protein | - |
| GW952_RS03635 | 763033..763686 | + | 654 | WP_160741059.1 | protein-serine/threonine phosphatase | - |
| GW952_RS03640 | 763683..763874 | - | 192 | WP_004122014.1 | YebW family protein | - |
| GW952_RS03645 | 763972..764211 | - | 240 | WP_004852069.1 | YebV family protein | - |
| GW952_RS03650 | 764327..765760 | - | 1434 | WP_160741060.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T148872 NZ_CP048108:760930-761033 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT148872 NZ_CP048108:c761040-760872 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
