Detailed information of TA system TA148676

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): hipBA/HipA-HipB
• Location: 2354580..2356168
• Replicon: chromosome
• Accession: NZ_CP048010
• Organism: Escherichia coli strain RUT3575

Toxin (Protein)

• Gene name: hipA
• Uniprot ID: F4NFZ0
• Locus tag: GW576_RS11630
• Protein ID: WP_001125463.1
• Coordinates: 2354846..2356168 (+)
• Length: 441 a.a.

Antitoxin (Protein)

• Gene name: hipB
• Uniprot ID: -
• Locus tag: GW576_RS11625
• Protein ID: WP_001296726.1
• Coordinates: 2354580..2354846 (+)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
GW576_RS11625	2354580..2354846	+	267	WP_001296726.1	type II toxin-antitoxin system antitoxin HipB	Antitoxin
GW576_RS11630	2354846..2356168	+	1323	WP_001125463.1	type II toxin-antitoxin system serine/threonine protein kinase toxin HipA	Toxin
GW576_RS11635	2356480..2356688	+	209	Protein_2209	helix-turn-helix transcriptional regulator	-
GW576_RS11640	2357120..2357683	+	564	WP_001373493.1	type 1 fimbrial major subunit FimA	-
GW576_RS11645	2358044..2358754	+	711	WP_001195166.1	fimbria/pilus periplasmic chaperone	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• HipA, N-terminal subdomain 1 (7-103)

Antitoxin

• Cro/C1-type helix-turn-helix domain (14-69)

Sequences

Toxin

Protein

• Length: 441 a.a.
• Molecular weight: 49422.05 Da
• Isoelectric Point: 9.1203

>T148676 WP_001125463.1 NZ_CP048010:2354846-2356168 [Escherichia coli]
MPKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYH
AKSRQPFDLLSEIGRDSVGAVTLLPENETITRPIMAWEKLTEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTAL
LRIGNDWCIPKGITPTTHIIKLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGRVRALAVERFDRRW
NTERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALRDRYDFMKFQVFQWLIGATDGHAKNFSVFIQ
AGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIP
AALDNVKTSLPTDFPENVVTAVETNVLRLHGRLSREYGSK

Nucleotide

• Length: 1323 bp

>T148676 NZ_CP063839:c3714924-3714631 [Sphingopyxis granuli]
ATGATCGAAATTCGGCGCACGGACGATTTCATCCAGTGGATTGCCGGACTTCGGGACGTTGCAGCACGCGCTCGTATCGC
AAAGCGCCTCAATCGTCTTGCGATGGGTAACTCGGGGGATGTCAAATCGGTCGGCGGCGGAGTCAGCGAACTGCGCTTCA
CGTTCGGGCCCGGATATCGCGTTTATTTTACGAGGCGGGGCGATGTCGTGGTGATCCTGCTGTGCGGTGGCGACAAGGGA
TCGCAATCGCGCGACATCGAAAAGGCCAAGGCGATGGCGAAGGAGATCGAATGA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 10047.39 Da
• Isoelectric Point: 4.9632

>AT148676 WP_001296726.1 NZ_CP048010:2354580-2354846 [Escherichia coli]
MMSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNASPES
TEQQDLEW

Nucleotide

• Length: 267 bp

>AT148676 NZ_CP063839:c3714634-3714350 [Sphingopyxis granuli]
ATGATGGCTATTGAAACCAAAATCTGGGATCCGGCAGAACTTCTTCGCACGCCCGAGGATATCGCCGCCTATCTCGACAC
CTATCTGGAAGACGGCGACAGCGAGGAAATCCGCGAGGCGTTGAGGACCATCGCTCGCTCGCAAGGCATGACGGCGCTGG
CCCGCAAGACCGGTCTGACGCGCGAAGCCCTCTACAAGGCGCTGGGTGAGAACGGCAATCCGACCCTCGATACGCTGGTC
AGGATATGCAGGGCATTGGGGCTGCGACTCTCGCTGGCGGCGTGA

Structures

Toxin

• AlphaFold DB: A0A7U9IYX0