Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2028904..2029175 | Replicon | chromosome |
| Accession | NZ_CP048010 | ||
| Organism | Escherichia coli strain RUT3575 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029034..2029137 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2028904..2029175 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GW576_RS10000 | 2025459..2026121 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GW576_RS10005 | 2026145..2026801 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GW576_RS10010 | 2026903..2027133 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GW576_RS10015 | 2027272..2027646 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GW576_RS10020 | 2027650..2028522 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GW576_RS10025 | 2028535..2028876 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2028904..2029175 | - | 272 | - | - | Antitoxin |
| - | 2029034..2029137 | + | 104 | - | - | Toxin |
| GW576_RS10030 | 2029272..2029928 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GW576_RS10035 | 2029929..2030120 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GW576_RS10040 | 2030225..2030461 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GW576_RS10045 | 2030579..2032018 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T148668 NZ_CP048010:2029034-2029137 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT148668 NZ_CP048010:c2029175-2028904 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
