Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 1899606..1900165 | Replicon | chromosome |
| Accession | NZ_CP047995 | ||
| Organism | Vibrio parahaemolyticus strain 20150710009 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | GSS20_RS08640 | Protein ID | WP_031846599.1 |
| Coordinates | 1899887..1900165 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | GSS20_RS08635 | Protein ID | WP_031846598.1 |
| Coordinates | 1899606..1899890 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSS20_RS08595 (GSS20_09080) | 1894711..1894791 | - | 81 | WP_078532227.1 | DUF3265 domain-containing protein | - |
| GSS20_RS08600 (GSS20_09085) | 1894806..1895228 | - | 423 | WP_140392184.1 | hypothetical protein | - |
| GSS20_RS08605 (GSS20_09090) | 1895376..1896260 | - | 885 | WP_031778322.1 | hypothetical protein | - |
| GSS20_RS08610 | 1897261..1897428 | - | 168 | WP_162457647.1 | DUF3265 domain-containing protein | - |
| GSS20_RS08615 (GSS20_09105) | 1897701..1897793 | - | 93 | WP_079386106.1 | DUF3265 domain-containing protein | - |
| GSS20_RS08620 (GSS20_09110) | 1897808..1898365 | - | 558 | WP_029857376.1 | hypothetical protein | - |
| GSS20_RS08625 (GSS20_09115) | 1898392..1898484 | - | 93 | WP_072612521.1 | DUF3265 domain-containing protein | - |
| GSS20_RS08630 | 1898952..1899064 | - | 113 | Protein_1670 | DUF3265 domain-containing protein | - |
| GSS20_RS08635 (GSS20_09125) | 1899606..1899890 | + | 285 | WP_031846598.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| GSS20_RS08640 (GSS20_09130) | 1899887..1900165 | + | 279 | WP_031846599.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| GSS20_RS08645 (GSS20_09135) | 1900194..1900286 | - | 93 | WP_079766442.1 | DUF3265 domain-containing protein | - |
| GSS20_RS08650 (GSS20_09140) | 1900301..1900654 | - | 354 | WP_031829440.1 | hypothetical protein | - |
| GSS20_RS08655 (GSS20_09150) | 1900827..1901582 | - | 756 | WP_006741457.1 | DUF3944 domain-containing protein | - |
| GSS20_RS08660 (GSS20_09155) | 1901804..1903423 | - | 1620 | WP_228846245.1 | DUF4263 domain-containing protein | - |
| GSS20_RS08665 (GSS20_09160) | 1903589..1903855 | - | 267 | WP_025527397.1 | barstar family protein | - |
| GSS20_RS08670 (GSS20_09165) | 1904058..1904564 | + | 507 | WP_062905969.1 | hypothetical protein | - |
| GSS20_RS08675 (GSS20_09170) | 1904716..1904934 | - | 219 | WP_031778385.1 | DUF6500 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1882254..1972857 | 90603 | |
| - | inside | Integron | - | - | 1885594..1917761 | 32167 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10935.69 Da Isoelectric Point: 4.3324
>T148642 WP_031846599.1 NZ_CP047995:1899887-1900165 [Vibrio parahaemolyticus]
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPDISMIVSYWIEGDIIRIM
RVLHQKQKFPMD
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPDISMIVSYWIEGDIIRIM
RVLHQKQKFPMD
Download Length: 279 bp
>T148642 NZ_CP063813:c146255-145980 [Microbacterium sp. WY121]
GTGATCGGGCCCTACGAGGTCGTCTTCACACGATCGGCGAGGCGTGCGCTCGAGGTCACGCTCCCCGAATCCGTCGCCGC
AGCGGTGTTCGAGTTCATCGTCGGGCCGCTGGCAGCCAACCCGACGAGACTGGGCAATCCGTTGCGTGAGCCGCTCGCGC
CTTTGTACTCAGCGCGTCGCGGCGAGTATCGAGTGCTCTATCGGATCGAGGACGACCGCCTGGTCATCGAGATCGTCACC
ATCGAGCATCGTCGGGACGCGTACCAACGCCGCTGA
GTGATCGGGCCCTACGAGGTCGTCTTCACACGATCGGCGAGGCGTGCGCTCGAGGTCACGCTCCCCGAATCCGTCGCCGC
AGCGGTGTTCGAGTTCATCGTCGGGCCGCTGGCAGCCAACCCGACGAGACTGGGCAATCCGTTGCGTGAGCCGCTCGCGC
CTTTGTACTCAGCGCGTCGCGGCGAGTATCGAGTGCTCTATCGGATCGAGGACGACCGCCTGGTCATCGAGATCGTCACC
ATCGAGCATCGTCGGGACGCGTACCAACGCCGCTGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 11055.37 Da Isoelectric Point: 9.2167
>AT148642 WP_031846598.1 NZ_CP047995:1899606-1899890 [Vibrio parahaemolyticus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVDHQTAKSR
MEERKARIRNRGKQ
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVDHQTAKSR
MEERKARIRNRGKQ
Download Length: 285 bp
>AT148642 NZ_CP063813:c146536-146252 [Microbacterium sp. WY121]
ATGACGGTACTGTCACTCGCGGATGCGCGCGCATCGCTGAGCAAGCACATCGAATCGGCGGCGACCACTCATGAGCGTTT
CGAGATCACACGCAACGGTGCTCGAGTCGCGGTTCTGCTGAGCGCTGAGGACTATGACGCGCTCGTGGAGACCGTGGACA
TCTTGAGCCGTCCTGACGAGGTCGCAGCGTTGAGGGAGGCGATCGCCGAGCTCGAGTCGGGCGACGTGTCGTCGGCAGAT
GAGGTTCGTGCCGCTATGGTCGCGCGCGGTCGGCTTGCCGAGTGA
ATGACGGTACTGTCACTCGCGGATGCGCGCGCATCGCTGAGCAAGCACATCGAATCGGCGGCGACCACTCATGAGCGTTT
CGAGATCACACGCAACGGTGCTCGAGTCGCGGTTCTGCTGAGCGCTGAGGACTATGACGCGCTCGTGGAGACCGTGGACA
TCTTGAGCCGTCCTGACGAGGTCGCAGCGTTGAGGGAGGCGATCGCCGAGCTCGAGTCGGGCGACGTGTCGTCGGCAGAT
GAGGTTCGTGCCGCTATGGTCGCGCGCGGTCGGCTTGCCGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|